miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 105895 0.97 0.020816
Target:  5'- aAGAGUGCCCAUAACCAGGGaAGCGGGu -3'
miRNA:   3'- -UCUCACGGGUAUUGGUCCUcUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 162400 0.69 0.792332
Target:  5'- cGGGacCCCGgugGGCCAGGAuGGUGGGg -3'
miRNA:   3'- uCUCacGGGUa--UUGGUCCUcUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 16059 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 93280 0.66 0.929921
Target:  5'- cGGGGuUGCCCuc-GCCGGuggucaucucuGAGAGgGGGu -3'
miRNA:   3'- -UCUC-ACGGGuauUGGUC-----------CUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 53112 0.74 0.544951
Target:  5'- cGGAGgcgGCCCGgc-CCGGGGGAGCGcGa -3'
miRNA:   3'- -UCUCa--CGGGUauuGGUCCUCUCGC-Cc -5'
29075 5' -55.8 NC_006146.1 + 53475 0.73 0.563874
Target:  5'- cGGGUGCCuCGUcggucagGGCCGGGGGuGCGGu -3'
miRNA:   3'- uCUCACGG-GUA-------UUGGUCCUCuCGCCc -5'
29075 5' -55.8 NC_006146.1 + 130714 0.72 0.62555
Target:  5'- gAGAGaGCCCGaggagGACgAGGAGgcGGCGGGc -3'
miRNA:   3'- -UCUCaCGGGUa----UUGgUCCUC--UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 66167 0.71 0.706392
Target:  5'- cAGGGUGCUCAUGACCgAGGgccAGAcGCaGGa -3'
miRNA:   3'- -UCUCACGGGUAUUGG-UCC---UCU-CGcCC- -5'
29075 5' -55.8 NC_006146.1 + 168602 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 69848 0.69 0.792332
Target:  5'- ----aGCCCGUGGCCcuGGGAGGuCGGGc -3'
miRNA:   3'- ucucaCGGGUAUUGG--UCCUCUcGCCC- -5'
29075 5' -55.8 NC_006146.1 + 170465 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 167669 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 114959 0.8 0.271033
Target:  5'- uGAGUGCCCuggaggAGgCAGaGAGGGCGGGg -3'
miRNA:   3'- uCUCACGGGua----UUgGUC-CUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 157600 0.7 0.745599
Target:  5'- -uGGUGCCCAgcACguGGGGGuagucGCGGGc -3'
miRNA:   3'- ucUCACGGGUauUGguCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 120125 0.76 0.440579
Target:  5'- cGuGUGCCCAcaccACCgAGGAGAGCGaGGa -3'
miRNA:   3'- uCuCACGGGUau--UGG-UCCUCUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 131512 0.71 0.706392
Target:  5'- cGGGaaaggGCCCAgggUAACCGGGcgccGAGUGGGa -3'
miRNA:   3'- uCUCa----CGGGU---AUUGGUCCu---CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 166641 0.69 0.783236
Target:  5'- uGAGUGgCCGcggacGCCAGaGcGAGCGGGa -3'
miRNA:   3'- uCUCACgGGUau---UGGUC-CuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 12981 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 89783 0.74 0.543961
Target:  5'- cGAGggGCCCAUGGCCguggacgaggacgAGGcAGAgGCGGGg -3'
miRNA:   3'- uCUCa-CGGGUAUUGG-------------UCC-UCU-CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 163455 0.73 0.605227
Target:  5'- cGGGGUGCCCGgucuugCAGGuucuGAGUGGGu -3'
miRNA:   3'- -UCUCACGGGUauug--GUCCu---CUCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.