miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 25293 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 16059 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 167669 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 89783 0.74 0.543961
Target:  5'- cGAGggGCCCAUGGCCguggacgaggacgAGGcAGAgGCGGGg -3'
miRNA:   3'- uCUCa-CGGGUAUUGG-------------UCC-UCU-CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 23610 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 169129 0.68 0.835505
Target:  5'- gGGAGgGCCCGgGGCCGcgcguGGGGAuggccgGCGGGa -3'
miRNA:   3'- -UCUCaCGGGUaUUGGU-----CCUCU------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 162400 0.69 0.792332
Target:  5'- cGGGacCCCGgugGGCCAGGAuGGUGGGg -3'
miRNA:   3'- uCUCacGGGUa--UUGGUCCUcUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 120125 0.76 0.440579
Target:  5'- cGuGUGCCCAcaccACCgAGGAGAGCGaGGa -3'
miRNA:   3'- uCuCACGGGUau--UGG-UCCUCUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 168197 0.68 0.835505
Target:  5'- gGGAGgGCCCGgGGCCGcgcguGGGGAuggccgGCGGGa -3'
miRNA:   3'- -UCUCaCGGGUaUUGGU-----CCUCU------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 114959 0.8 0.271033
Target:  5'- uGAGUGCCCuggaggAGgCAGaGAGGGCGGGg -3'
miRNA:   3'- uCUCACGGGua----UUgGUC-CUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 12981 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 28371 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 157600 0.7 0.745599
Target:  5'- -uGGUGCCCAgcACguGGGGGuagucGCGGGc -3'
miRNA:   3'- ucUCACGGGUauUGguCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 168602 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 130714 0.72 0.62555
Target:  5'- gAGAGaGCCCGaggagGACgAGGAGgcGGCGGGc -3'
miRNA:   3'- -UCUCaCGGGUa----UUGgUCCUC--UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 53112 0.74 0.544951
Target:  5'- cGGAGgcgGCCCGgc-CCGGGGGAGCGcGa -3'
miRNA:   3'- -UCUCa--CGGGUauuGGUCCUCUCGC-Cc -5'
29075 5' -55.8 NC_006146.1 + 63019 0.68 0.869762
Target:  5'- cGGGUGCCCgacGUAACCugauuuacaccacuGGccuAGAGCGGa -3'
miRNA:   3'- uCUCACGGG---UAUUGGu-------------CC---UCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 26688 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 14376 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 170061 0.68 0.835505
Target:  5'- gGGAGgGCCCGgGGCCGcgcguGGGGAuggccgGCGGGa -3'
miRNA:   3'- -UCUCaCGGGUaUUGGU-----CCUCU------CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.