miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 5' -50.5 NC_006146.1 + 95631 0.66 0.997049
Target:  5'- gGAGCAggucUUGGGUCaaaAgccccugccaugggaUCUGGCAUAUguguagcCGGg -3'
miRNA:   3'- -CUCGU----AACCCAG---U---------------AGACCGUAUA-------GCC- -5'
29077 5' -50.5 NC_006146.1 + 156678 0.66 0.996898
Target:  5'- cGAGguUUGGGgCggCUGGgg-GUCGGg -3'
miRNA:   3'- -CUCguAACCCaGuaGACCguaUAGCC- -5'
29077 5' -50.5 NC_006146.1 + 153600 0.66 0.996898
Target:  5'- cGAGguUUGGGggCggCUGGgg-GUCGGg -3'
miRNA:   3'- -CUCguAACCCa-GuaGACCguaUAGCC- -5'
29077 5' -50.5 NC_006146.1 + 150522 0.66 0.996898
Target:  5'- cGAGguUUGGGggCggCUGGgg-GUCGGg -3'
miRNA:   3'- -CUCguAACCCa-GuaGACCguaUAGCC- -5'
29077 5' -50.5 NC_006146.1 + 147444 0.66 0.996898
Target:  5'- cGAGguUUGGGggCggCUGGgg-GUCGGg -3'
miRNA:   3'- -CUCguAACCCa-GuaGACCguaUAGCC- -5'
29077 5' -50.5 NC_006146.1 + 144366 0.66 0.996898
Target:  5'- cGAGguUUGGGggCggCUGGgg-GUCGGg -3'
miRNA:   3'- -CUCguAACCCa-GuaGACCguaUAGCC- -5'
29077 5' -50.5 NC_006146.1 + 141288 0.66 0.996898
Target:  5'- cGAGguUUGGGggCggCUGGgg-GUCGGg -3'
miRNA:   3'- -CUCguAACCCa-GuaGACCguaUAGCC- -5'
29077 5' -50.5 NC_006146.1 + 36471 0.67 0.993273
Target:  5'- aAGC-UUGGGUCAUUgGGCcUGUUGa -3'
miRNA:   3'- cUCGuAACCCAGUAGaCCGuAUAGCc -5'
29077 5' -50.5 NC_006146.1 + 101713 0.67 0.991102
Target:  5'- aGAGCAgcGGGg-GUUUGGCuccUCGGg -3'
miRNA:   3'- -CUCGUaaCCCagUAGACCGuauAGCC- -5'
29077 5' -50.5 NC_006146.1 + 125309 0.67 0.991102
Target:  5'- aGGGCG-UGGuaaauuUCAUCUGGCAUGccaaaacuUCGGc -3'
miRNA:   3'- -CUCGUaACCc-----AGUAGACCGUAU--------AGCC- -5'
29077 5' -50.5 NC_006146.1 + 168372 0.7 0.961157
Target:  5'- gGGGCGggGGGUCGggcgGGCAUGcucCGGg -3'
miRNA:   3'- -CUCGUaaCCCAGUaga-CCGUAUa--GCC- -5'
29077 5' -50.5 NC_006146.1 + 167440 0.7 0.961157
Target:  5'- gGGGCGggGGGUCGggcgGGCAUGcucCGGg -3'
miRNA:   3'- -CUCGUaaCCCAGUaga-CCGUAUa--GCC- -5'
29077 5' -50.5 NC_006146.1 + 169304 0.7 0.961157
Target:  5'- gGGGCGggGGGUCGggcgGGCAUGcucCGGg -3'
miRNA:   3'- -CUCGUaaCCCAGUaga-CCGUAUa--GCC- -5'
29077 5' -50.5 NC_006146.1 + 170235 0.7 0.961157
Target:  5'- gGGGCGggGGGUCGggcgGGCAUGcucCGGg -3'
miRNA:   3'- -CUCGUaaCCCAGUaga-CCGUAUa--GCC- -5'
29077 5' -50.5 NC_006146.1 + 56796 0.71 0.939971
Target:  5'- uGAGCGcgGcGGcCGUCUGGCGgg-CGGg -3'
miRNA:   3'- -CUCGUaaC-CCaGUAGACCGUauaGCC- -5'
29077 5' -50.5 NC_006146.1 + 47983 0.72 0.912487
Target:  5'- aGAGCGUgGGGUCAgagguggCUGGUGg--CGGg -3'
miRNA:   3'- -CUCGUAaCCCAGUa------GACCGUauaGCC- -5'
29077 5' -50.5 NC_006146.1 + 107724 0.72 0.891572
Target:  5'- uGAGCAgguugauaaaaUGGGUCAgagaugggaaugUUGGCAUAUUGGg -3'
miRNA:   3'- -CUCGUa----------ACCCAGUa-----------GACCGUAUAGCC- -5'
29077 5' -50.5 NC_006146.1 + 106352 1.11 0.008136
Target:  5'- cGAGCAUUGGGUCAUCUGGCAUAUCGGc -3'
miRNA:   3'- -CUCGUAACCCAGUAGACCGUAUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.