miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29078 3' -59.1 NC_006146.1 + 148614 0.66 0.798248
Target:  5'- gAGGCACuuuGCaugcCACCCUCCcUGUCUg -3'
miRNA:   3'- gUCCGUGu--CGga--GUGGGAGGcGUAGA- -5'
29078 3' -59.1 NC_006146.1 + 109704 0.66 0.798248
Target:  5'- gGGGCAgAGCUcCGCCaugaCCGUGUCUg -3'
miRNA:   3'- gUCCGUgUCGGaGUGGga--GGCGUAGA- -5'
29078 3' -59.1 NC_006146.1 + 56580 0.66 0.798248
Target:  5'- uCAGGgGCGGCCgggcgccgaGCCCgCCGCcgGUCUc -3'
miRNA:   3'- -GUCCgUGUCGGag-------UGGGaGGCG--UAGA- -5'
29078 3' -59.1 NC_006146.1 + 4004 0.66 0.798248
Target:  5'- gAGGCgcugaugaacGCGGCCUUugCC-CCGC-UCg -3'
miRNA:   3'- gUCCG----------UGUCGGAGugGGaGGCGuAGa -5'
29078 3' -59.1 NC_006146.1 + 48285 0.66 0.798248
Target:  5'- aGGGCccCGGCCUCcuccgccccucGCCCUCCacCGUCg -3'
miRNA:   3'- gUCCGu-GUCGGAG-----------UGGGAGGc-GUAGa -5'
29078 3' -59.1 NC_006146.1 + 29649 0.66 0.798248
Target:  5'- uCAGGCGC--CUUUACCC-CCGUAUCc -3'
miRNA:   3'- -GUCCGUGucGGAGUGGGaGGCGUAGa -5'
29078 3' -59.1 NC_006146.1 + 13917 0.66 0.789341
Target:  5'- aGGGCGCccGCCUCcCCCUCCuC-UCUc -3'
miRNA:   3'- gUCCGUGu-CGGAGuGGGAGGcGuAGA- -5'
29078 3' -59.1 NC_006146.1 + 26228 0.66 0.789341
Target:  5'- aGGGCGCccGCCUCcCCCUCCuC-UCUc -3'
miRNA:   3'- gUCCGUGu-CGGAGuGGGAGGcGuAGA- -5'
29078 3' -59.1 NC_006146.1 + 20072 0.66 0.789341
Target:  5'- aGGGCGCccGCCUCcCCCUCCuC-UCUc -3'
miRNA:   3'- gUCCGUGu-CGGAGuGGGAGGcGuAGA- -5'
29078 3' -59.1 NC_006146.1 + 43325 0.66 0.789341
Target:  5'- -cGGCGCGGCCUCggccGCCCagggCCaGCAg-- -3'
miRNA:   3'- guCCGUGUCGGAG----UGGGa---GG-CGUaga -5'
29078 3' -59.1 NC_006146.1 + 16994 0.66 0.789341
Target:  5'- aGGGCGCccGCCUCcCCCUCCuC-UCUc -3'
miRNA:   3'- gUCCGUGu-CGGAGuGGGAGGcGuAGA- -5'
29078 3' -59.1 NC_006146.1 + 23150 0.66 0.789341
Target:  5'- aGGGCGCccGCCUCcCCCUCCuC-UCUc -3'
miRNA:   3'- gUCCGUGu-CGGAGuGGGAGGcGuAGA- -5'
29078 3' -59.1 NC_006146.1 + 29306 0.66 0.789341
Target:  5'- aGGGCGCccGCCUCcCCCUCCuC-UCUc -3'
miRNA:   3'- gUCCGUGu-CGGAGuGGGAGGcGuAGA- -5'
29078 3' -59.1 NC_006146.1 + 54088 0.66 0.788442
Target:  5'- -cGGCACAcGuCCUggaCGCCCUCCaccacgcccuugaGCGUCUg -3'
miRNA:   3'- guCCGUGU-C-GGA---GUGGGAGG-------------CGUAGA- -5'
29078 3' -59.1 NC_006146.1 + 24734 0.66 0.78393
Target:  5'- cCAGGCgcucgucauucagaaGCAGCCUcCGCCgC-CUGCGUCc -3'
miRNA:   3'- -GUCCG---------------UGUCGGA-GUGG-GaGGCGUAGa -5'
29078 3' -59.1 NC_006146.1 + 48880 0.66 0.780296
Target:  5'- cCAGGCGCcaGGCCUgCGCCUcuUCUGUcUCa -3'
miRNA:   3'- -GUCCGUG--UCGGA-GUGGG--AGGCGuAGa -5'
29078 3' -59.1 NC_006146.1 + 21305 0.66 0.780296
Target:  5'- gAGGCGgcCAGCCUC-CUCUcCCGCcgCc -3'
miRNA:   3'- gUCCGU--GUCGGAGuGGGA-GGCGuaGa -5'
29078 3' -59.1 NC_006146.1 + 48393 0.66 0.780296
Target:  5'- cCGGGCuccGCGGCCUCcauucucucgACCCcgCCGcCGUCc -3'
miRNA:   3'- -GUCCG---UGUCGGAG----------UGGGa-GGC-GUAGa -5'
29078 3' -59.1 NC_006146.1 + 41788 0.66 0.780296
Target:  5'- cCGGGCGCccGCuCUCagGCCCUCUGCcgguuUCUg -3'
miRNA:   3'- -GUCCGUGu-CG-GAG--UGGGAGGCGu----AGA- -5'
29078 3' -59.1 NC_006146.1 + 62020 0.66 0.771124
Target:  5'- -uGGcCGCGGCgCUCGgCCUCUGCcgCa -3'
miRNA:   3'- guCC-GUGUCG-GAGUgGGAGGCGuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.