miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 147501 0.66 0.979381
Target:  5'- -cGGCAGguCCAgcggaaggcaguuagAGAACGCCaGUCCc -3'
miRNA:   3'- gcCCGUCguGGU---------------UUUUGUGGaCAGGc -5'
29079 3' -53.4 NC_006146.1 + 61327 0.66 0.978466
Target:  5'- cCGGGUGGCcuaGCCGgcGAGGCACCUucaCCa -3'
miRNA:   3'- -GCCCGUCG---UGGU--UUUUGUGGAca-GGc -5'
29079 3' -53.4 NC_006146.1 + 167517 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 110527 0.66 0.978466
Target:  5'- aGGcGCuGCACCucgGAGACcuCCUGUUCa -3'
miRNA:   3'- gCC-CGuCGUGGu--UUUUGu-GGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 168449 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 170312 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 169381 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 163237 0.66 0.978466
Target:  5'- aGGGUAGCGcugcuCCAGGAACcCCggGUUCa -3'
miRNA:   3'- gCCCGUCGU-----GGUUUUUGuGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 166517 0.66 0.978466
Target:  5'- uCGGGCGGCuguGCCAA--GCGgCaggGUCCu -3'
miRNA:   3'- -GCCCGUCG---UGGUUuuUGUgGa--CAGGc -5'
29079 3' -53.4 NC_006146.1 + 105917 0.66 0.978466
Target:  5'- gCGGGUcuucaGGCACCAGAGAgGuCCagGUuuGg -3'
miRNA:   3'- -GCCCG-----UCGUGGUUUUUgU-GGa-CAggC- -5'
29079 3' -53.4 NC_006146.1 + 42537 0.66 0.978466
Target:  5'- -uGGC-GUACUggGAGGGgGCCUGUCCGu -3'
miRNA:   3'- gcCCGuCGUGG--UUUUUgUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 15161 0.66 0.978466
Target:  5'- uCGGGCGaCGCCGugGAAGCGCUgaaggCCGa -3'
miRNA:   3'- -GCCCGUcGUGGU--UUUUGUGGaca--GGC- -5'
29079 3' -53.4 NC_006146.1 + 91263 0.66 0.978466
Target:  5'- uGGGgGGCucGCCGGccuguGAC-CCUGUCCc -3'
miRNA:   3'- gCCCgUCG--UGGUUu----UUGuGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 19255 0.66 0.978466
Target:  5'- aGGGCaAGCACCuuugaccgcAAGACccCCUG-CCGg -3'
miRNA:   3'- gCCCG-UCGUGGu--------UUUUGu-GGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 43386 0.66 0.978466
Target:  5'- gGGGCAGCAgCGGcuGCcUCUGccCCGg -3'
miRNA:   3'- gCCCGUCGUgGUUuuUGuGGACa-GGC- -5'
29079 3' -53.4 NC_006146.1 + 129986 0.66 0.978232
Target:  5'- -uGGCGGCcugaaacACCAAAAACugCaucgucGUCCGg -3'
miRNA:   3'- gcCCGUCG-------UGGUUUUUGugGa-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 16211 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 19289 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 22367 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 25445 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.