miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 61327 0.66 0.978466
Target:  5'- cCGGGUGGCcuaGCCGgcGAGGCACCUucaCCa -3'
miRNA:   3'- -GCCCGUCG---UGGU--UUUUGUGGAca-GGc -5'
29079 3' -53.4 NC_006146.1 + 151816 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 148738 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 145661 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 142583 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 57881 0.66 0.967601
Target:  5'- cCGGGCcGacaGCCGGGuggaacGGCGCCUuGUCCa -3'
miRNA:   3'- -GCCCGuCg--UGGUUU------UUGUGGA-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 53623 0.66 0.967601
Target:  5'- cCGGGCcguGCACCGAcuGAUgguggggaACCUG-CCGa -3'
miRNA:   3'- -GCCCGu--CGUGGUUu-UUG--------UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 47525 0.66 0.967601
Target:  5'- aGcGGCAGUGUCGGGGGCGCCgccucgGUCCu -3'
miRNA:   3'- gC-CCGUCGUGGUUUUUGUGGa-----CAGGc -5'
29079 3' -53.4 NC_006146.1 + 66780 0.66 0.967601
Target:  5'- aCGGGguGCgACCu-GGACACCggGcCCa -3'
miRNA:   3'- -GCCCguCG-UGGuuUUUGUGGa-CaGGc -5'
29079 3' -53.4 NC_006146.1 + 154894 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 157972 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 168528 0.66 0.970621
Target:  5'- -uGGaAGC-CCGcgGACGCCUGUCCc -3'
miRNA:   3'- gcCCgUCGuGGUuuUUGUGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 42537 0.66 0.978466
Target:  5'- -uGGC-GUACUggGAGGGgGCCUGUCCGu -3'
miRNA:   3'- gcCCGuCGUGG--UUUUUgUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 15161 0.66 0.978466
Target:  5'- uCGGGCGaCGCCGugGAAGCGCUgaaggCCGa -3'
miRNA:   3'- -GCCCGUcGUGGU--UUUUGUGGaca--GGC- -5'
29079 3' -53.4 NC_006146.1 + 91263 0.66 0.978466
Target:  5'- uGGGgGGCucGCCGGccuguGAC-CCUGUCCc -3'
miRNA:   3'- gCCCgUCG--UGGUUu----UUGuGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 19255 0.66 0.978466
Target:  5'- aGGGCaAGCACCuuugaccgcAAGACccCCUG-CCGg -3'
miRNA:   3'- gCCCG-UCGUGGu--------UUUUGu-GGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 129986 0.66 0.978232
Target:  5'- -uGGCGGCcugaaacACCAAAAACugCaucgucGUCCGg -3'
miRNA:   3'- gcCCGUCG-------UGGUUUUUGugGa-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 64386 0.66 0.976047
Target:  5'- aGGGgAuGCGCC-----CACCUGUCUGa -3'
miRNA:   3'- gCCCgU-CGUGGuuuuuGUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 54020 0.66 0.973434
Target:  5'- uGGaGCAgGCACUGcu-GCGCCUGgCCGg -3'
miRNA:   3'- gCC-CGU-CGUGGUuuuUGUGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 41762 0.66 0.973434
Target:  5'- uGGGCuuccCGCCGGAGGC-CCUGcgcCCGg -3'
miRNA:   3'- gCCCGuc--GUGGUUUUUGuGGACa--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.