miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 42537 0.66 0.978466
Target:  5'- -uGGC-GUACUggGAGGGgGCCUGUCCGu -3'
miRNA:   3'- gcCCGuCGUGG--UUUUUgUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 15161 0.66 0.978466
Target:  5'- uCGGGCGaCGCCGugGAAGCGCUgaaggCCGa -3'
miRNA:   3'- -GCCCGUcGUGGU--UUUUGUGGaca--GGC- -5'
29079 3' -53.4 NC_006146.1 + 169381 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 170312 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 168449 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 167517 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 163237 0.66 0.978466
Target:  5'- aGGGUAGCGcugcuCCAGGAACcCCggGUUCa -3'
miRNA:   3'- gCCCGUCGU-----GGUUUUUGuGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 166517 0.66 0.978466
Target:  5'- uCGGGCGGCuguGCCAA--GCGgCaggGUCCu -3'
miRNA:   3'- -GCCCGUCG---UGGUUuuUGUgGa--CAGGc -5'
29079 3' -53.4 NC_006146.1 + 47525 0.66 0.967601
Target:  5'- aGcGGCAGUGUCGGGGGCGCCgccucgGUCCu -3'
miRNA:   3'- gC-CCGUCGUGGUUUUUGUGGa-----CAGGc -5'
29079 3' -53.4 NC_006146.1 + 129986 0.66 0.978232
Target:  5'- -uGGCGGCcugaaacACCAAAAACugCaucgucGUCCGg -3'
miRNA:   3'- gcCCGUCG-------UGGUUUUUGugGa-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 157356 0.67 0.964368
Target:  5'- cCGGcGCccGGCGCCugcAGCAgguuCCUGUCCa -3'
miRNA:   3'- -GCC-CG--UCGUGGuuuUUGU----GGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 56583 0.67 0.957236
Target:  5'- gGGGCggccgGGCGCCGAGccCGCCg--CCGg -3'
miRNA:   3'- gCCCG-----UCGUGGUUUuuGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 40110 0.67 0.960914
Target:  5'- cCGGaGcCGGCGCCuguuucuGGGACACC-GUCUGg -3'
miRNA:   3'- -GCC-C-GUCGUGGu------UUUUGUGGaCAGGC- -5'
29079 3' -53.4 NC_006146.1 + 155316 0.67 0.944809
Target:  5'- -aGGCcGCGCCcucgccGAcGCGCCUGUCCu -3'
miRNA:   3'- gcCCGuCGUGGu-----UUuUGUGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 142350 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 51546 0.67 0.952111
Target:  5'- gGGGCAGCcgccguacgugaugACCcuGGGCGCCg--CCGg -3'
miRNA:   3'- gCCCGUCG--------------UGGuuUUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 66606 0.67 0.953329
Target:  5'- aGGG-AGCccuuuucuauaGCCAAGGACACCUacaaGUCCc -3'
miRNA:   3'- gCCCgUCG-----------UGGUUUUUGUGGA----CAGGc -5'
29079 3' -53.4 NC_006146.1 + 126794 0.67 0.953329
Target:  5'- cCGGGUucGGCGCCGAGcGCGCg-GcCCGa -3'
miRNA:   3'- -GCCCG--UCGUGGUUUuUGUGgaCaGGC- -5'
29079 3' -53.4 NC_006146.1 + 120770 0.67 0.956856
Target:  5'- -uGGCGGCGCCucaugucccuggcGGAGGuCGCCgGUCCGc -3'
miRNA:   3'- gcCCGUCGUGG-------------UUUUU-GUGGaCAGGC- -5'
29079 3' -53.4 NC_006146.1 + 137699 0.67 0.957236
Target:  5'- cCGG--AGCACCAGGAGCACCcGgaggCCa -3'
miRNA:   3'- -GCCcgUCGUGGUUUUUGUGGaCa---GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.