Results 61 - 80 of 167 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 66606 | 0.67 | 0.953329 |
Target: 5'- aGGG-AGCccuuuucuauaGCCAAGGACACCUacaaGUCCc -3' miRNA: 3'- gCCCgUCG-----------UGGUUUUUGUGGA----CAGGc -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 126794 | 0.67 | 0.953329 |
Target: 5'- cCGGGUucGGCGCCGAGcGCGCg-GcCCGa -3' miRNA: 3'- -GCCCG--UCGUGGUUUuUGUGgaCaGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 46500 | 0.67 | 0.944809 |
Target: 5'- cCGGGCuugAGC-CCGGAGGCACuCUGggCGg -3' miRNA: 3'- -GCCCG---UCGuGGUUUUUGUG-GACagGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 120770 | 0.67 | 0.956856 |
Target: 5'- -uGGCGGCGCCucaugucccuggcGGAGGuCGCCgGUCCGc -3' miRNA: 3'- gcCCGUCGUGG-------------UUUUU-GUGGaCAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 137699 | 0.67 | 0.957236 |
Target: 5'- cCGG--AGCACCAGGAGCACCcGgaggCCa -3' miRNA: 3'- -GCCcgUCGUGGUUUUUGUGGaCa---GGc -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 142350 | 0.67 | 0.957236 |
Target: 5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3' miRNA: 3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 145428 | 0.67 | 0.957236 |
Target: 5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3' miRNA: 3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 103448 | 0.67 | 0.963695 |
Target: 5'- gCGGaGCAcaugcGCACCuacuucacccgcGAGACuuACCUGUCCGa -3' miRNA: 3'- -GCC-CGU-----CGUGGu-----------UUUUG--UGGACAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 157739 | 0.67 | 0.957236 |
Target: 5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3' miRNA: 3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 148506 | 0.67 | 0.957236 |
Target: 5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3' miRNA: 3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 151584 | 0.67 | 0.957236 |
Target: 5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3' miRNA: 3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 154662 | 0.68 | 0.940191 |
Target: 5'- cCGGGCAG-GCCGGGucuuGgGCCUgggaGUCCGg -3' miRNA: 3'- -GCCCGUCgUGGUUUu---UgUGGA----CAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 64434 | 0.68 | 0.940191 |
Target: 5'- gGGGUcucGGCGCCGAGacagccuuggGugGCgCUGUCCu -3' miRNA: 3'- gCCCG---UCGUGGUUU----------UugUG-GACAGGc -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 41222 | 0.68 | 0.930227 |
Target: 5'- uCGaGGCGGCGCUGAAGAgACCgGcCCu -3' miRNA: 3'- -GC-CCGUCGUGGUUUUUgUGGaCaGGc -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 4810 | 0.68 | 0.935331 |
Target: 5'- gGGGC-GCcucaACCGAuccauGCACgUGUCCGa -3' miRNA: 3'- gCCCGuCG----UGGUUuu---UGUGgACAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 101689 | 0.68 | 0.924878 |
Target: 5'- aCGGGCGGCGCUagagggggggaGAGAGCAgCggggGUuuGg -3' miRNA: 3'- -GCCCGUCGUGG-----------UUUUUGUgGa---CAggC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 156144 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 153066 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 146910 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
|||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 143832 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home