miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 108395 1.09 0.005603
Target:  5'- cCGGGCAGCACCAAAAACACCUGUCCGu -3'
miRNA:   3'- -GCCCGUCGUGGUUUUUGUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 120701 0.81 0.325034
Target:  5'- aCGGGCGGaCGCUGGAgcAGCACCUGaUCCGg -3'
miRNA:   3'- -GCCCGUC-GUGGUUU--UUGUGGAC-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 114408 0.78 0.432583
Target:  5'- uGGGCAGCACCAuggggAAAACAa-UGUCCa -3'
miRNA:   3'- gCCCGUCGUGGU-----UUUUGUggACAGGc -5'
29079 3' -53.4 NC_006146.1 + 32870 0.78 0.469615
Target:  5'- gCGGGCGGCGCgAGGucccugccuGGCACCaggGUCCGg -3'
miRNA:   3'- -GCCCGUCGUGgUUU---------UUGUGGa--CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 34778 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34871 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35242 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34963 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35428 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35521 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35707 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35149 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34313 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34592 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35056 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34220 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34406 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34499 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33941 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35614 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.