miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 35149 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34313 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34871 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 35242 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34034 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34220 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33941 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33756 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33849 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33570 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 72462 0.74 0.640499
Target:  5'- cCGGGCGGCGCCGAAAccgguucuggGCGCUUccCCGu -3'
miRNA:   3'- -GCCCGUCGUGGUUUU----------UGUGGAcaGGC- -5'
29079 3' -53.4 NC_006146.1 + 139359 0.73 0.702145
Target:  5'- gGGGCGGCGCCGgggGGggUGCCUG-CUGu -3'
miRNA:   3'- gCCCGUCGUGGU---UUuuGUGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 54013 0.73 0.712262
Target:  5'- aGGGcCGGCACCAGGuGGCGCC--UCCGg -3'
miRNA:   3'- gCCC-GUCGUGGUUU-UUGUGGacAGGC- -5'
29079 3' -53.4 NC_006146.1 + 28163 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 22007 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 25085 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 18930 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 15852 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 12773 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 127624 0.73 0.742156
Target:  5'- uGGGCGGCACCGccGGCccgcuGCCUcuuGUCCa -3'
miRNA:   3'- gCCCGUCGUGGUuuUUG-----UGGA---CAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.