miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 170763 0.72 0.751937
Target:  5'- aCGGGCAGCcauCCAG--GCGCCauaGUCCu -3'
miRNA:   3'- -GCCCGUCGu--GGUUuuUGUGGa--CAGGc -5'
29079 3' -53.4 NC_006146.1 + 96905 0.72 0.760648
Target:  5'- aCGGGCAGCACCuccuccgcgaucgAGAAGCugUUcaacuccccGUCCGc -3'
miRNA:   3'- -GCCCGUCGUGG-------------UUUUUGugGA---------CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 60388 0.72 0.76161
Target:  5'- aGGuGCAGCGCCugGAGAACAUCUGcacccUCCu -3'
miRNA:   3'- gCC-CGUCGUGG--UUUUUGUGGAC-----AGGc -5'
29079 3' -53.4 NC_006146.1 + 67095 0.72 0.780595
Target:  5'- -cGGCGGcCACCAucacaAAGuauCGCCUGUCCGc -3'
miRNA:   3'- gcCCGUC-GUGGU-----UUUu--GUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 81806 0.72 0.780595
Target:  5'- gGGGCAGUGCCGGuAGCAUCgGUCg- -3'
miRNA:   3'- gCCCGUCGUGGUUuUUGUGGaCAGgc -5'
29079 3' -53.4 NC_006146.1 + 17696 0.72 0.780595
Target:  5'- aCGGGCGGCccguggcgGCCAA--GCGCCUGggggacguaaucUCCGu -3'
miRNA:   3'- -GCCCGUCG--------UGGUUuuUGUGGAC------------AGGC- -5'
29079 3' -53.4 NC_006146.1 + 20424 0.72 0.793564
Target:  5'- aGGGaCGGCuACCAGGgggccacugucauccAGCcCCUGUCCGg -3'
miRNA:   3'- gCCC-GUCG-UGGUUU---------------UUGuGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 167176 0.71 0.808028
Target:  5'- aGGGCcacgcGGCccCCAGAGAC-CCUGUCUGu -3'
miRNA:   3'- gCCCG-----UCGu-GGUUUUUGuGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 10530 0.71 0.816858
Target:  5'- uGGGCGGCcuGCCAAGGGCGCUgagacgCCa -3'
miRNA:   3'- gCCCGUCG--UGGUUUUUGUGGaca---GGc -5'
29079 3' -53.4 NC_006146.1 + 128820 0.71 0.825517
Target:  5'- gGGGCGGCGgCAGAGGggguCAcCCUGUCgCGa -3'
miRNA:   3'- gCCCGUCGUgGUUUUU----GU-GGACAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 75262 0.71 0.82893
Target:  5'- uGGGguGCACgGGGAugGCCgaggagccgagagcGUCCGg -3'
miRNA:   3'- gCCCguCGUGgUUUUugUGGa-------------CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 23429 0.71 0.833156
Target:  5'- gGGGCAGUACCAcAAGCuccggcuGCCcGUCuCGg -3'
miRNA:   3'- gCCCGUCGUGGUuUUUG-------UGGaCAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 160065 0.7 0.842287
Target:  5'- aGGaGCGGCACagucAGGCACCUGUggcCCGu -3'
miRNA:   3'- gCC-CGUCGUGguu-UUUGUGGACA---GGC- -5'
29079 3' -53.4 NC_006146.1 + 127561 0.7 0.850383
Target:  5'- aCGGGCuGCGCCugcuGGC-CCUGggcggCCGa -3'
miRNA:   3'- -GCCCGuCGUGGuuu-UUGuGGACa----GGC- -5'
29079 3' -53.4 NC_006146.1 + 23724 0.7 0.86596
Target:  5'- cCGGGCgaaggGGCGCCGGucuGCGCCgccgCCGg -3'
miRNA:   3'- -GCCCG-----UCGUGGUUuu-UGUGGaca-GGC- -5'
29079 3' -53.4 NC_006146.1 + 24115 0.7 0.86596
Target:  5'- aGGGCggcuGGCACCGGGccugUACCUGUCgCGu -3'
miRNA:   3'- gCCCG----UCGUGGUUUuu--GUGGACAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 146029 0.7 0.865961
Target:  5'- gGGGCAGCuCCu--GGCACUgcgcGUCCa -3'
miRNA:   3'- gCCCGUCGuGGuuuUUGUGGa---CAGGc -5'
29079 3' -53.4 NC_006146.1 + 156266 0.7 0.865961
Target:  5'- uGGGCAGCACCAuGAGCuCCc--CCa -3'
miRNA:   3'- gCCCGUCGUGGUuUUUGuGGacaGGc -5'
29079 3' -53.4 NC_006146.1 + 86270 0.7 0.865961
Target:  5'- uGGGCAGCACgGcgcuCACguagcuccuCUGUCCGg -3'
miRNA:   3'- gCCCGUCGUGgUuuuuGUG---------GACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 134127 0.7 0.868974
Target:  5'- aGGGCgaAGCACCGAuuacauAAGCACaagugcacuuccccgCUGUCCa -3'
miRNA:   3'- gCCCG--UCGUGGUU------UUUGUG---------------GACAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.