miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 136700 0.7 0.880678
Target:  5'- gCGGGCGGCGCgAGGucccuGCcugGCCcaggGUCCGg -3'
miRNA:   3'- -GCCCGUCGUGgUUUu----UG---UGGa---CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 151689 0.7 0.880678
Target:  5'- aGGGCGGCGCCuuGGGGC-CCggaGUCuCGg -3'
miRNA:   3'- gCCCGUCGUGGu-UUUUGuGGa--CAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 153950 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 128124 0.69 0.887701
Target:  5'- cCGaGGCGGCcacgcGCCGccuGCACCUGUCgGc -3'
miRNA:   3'- -GC-CCGUCG-----UGGUuuuUGUGGACAGgC- -5'
29079 3' -53.4 NC_006146.1 + 141639 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 157028 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 150872 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 147794 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 144716 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 56135 0.69 0.90105
Target:  5'- gCGGGCcccgAG-ACCGAGAGCACCUccccgcggccGUCCu -3'
miRNA:   3'- -GCCCG----UCgUGGUUUUUGUGGA----------CAGGc -5'
29079 3' -53.4 NC_006146.1 + 112978 0.69 0.906749
Target:  5'- -uGGCGGCGCCGGccAGCGCCcucugcaUGUCCu -3'
miRNA:   3'- gcCCGUCGUGGUUu-UUGUGG-------ACAGGc -5'
29079 3' -53.4 NC_006146.1 + 130532 0.69 0.90737
Target:  5'- cCGGGCGGCgACCAGGGG-GCCUucUCCGc -3'
miRNA:   3'- -GCCCGUCG-UGGUUUUUgUGGAc-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 47719 0.69 0.90737
Target:  5'- gGGaGCAGCGCCcGGAGCuCgUcGUCCGg -3'
miRNA:   3'- gCC-CGUCGUGGuUUUUGuGgA-CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 93592 0.69 0.91165
Target:  5'- uGGGCAuGCGCgAcccgccgggcuccuGGGGCugCUGUCCu -3'
miRNA:   3'- gCCCGU-CGUGgU--------------UUUUGugGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 121876 0.69 0.913449
Target:  5'- uCGGGCcGCGCCccgGAGAACGCCcUGcggcUCCu -3'
miRNA:   3'- -GCCCGuCGUGG---UUUUUGUGG-AC----AGGc -5'
29079 3' -53.4 NC_006146.1 + 95550 0.69 0.913449
Target:  5'- gGGGCAGCGuaugaCAugGACACCUGgaCGg -3'
miRNA:   3'- gCCCGUCGUg----GUuuUUGUGGACagGC- -5'
29079 3' -53.4 NC_006146.1 + 56753 0.69 0.913449
Target:  5'- aGGGcCAGCAU-----GCGCCUgGUCCGg -3'
miRNA:   3'- gCCC-GUCGUGguuuuUGUGGA-CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 28573 0.69 0.913449
Target:  5'- cCGGGUguAGCGCCAGcGacagccgcuucACACCUGcCCu -3'
miRNA:   3'- -GCCCG--UCGUGGUUuU-----------UGUGGACaGGc -5'
29079 3' -53.4 NC_006146.1 + 164401 0.69 0.913449
Target:  5'- aGGGUcaggAGCAuCCAAGGAcCACCcgGUCCu -3'
miRNA:   3'- gCCCG----UCGU-GGUUUUU-GUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 92087 0.69 0.913449
Target:  5'- gGGGCGGCccgGCCuGGGGCugCUG-CUGg -3'
miRNA:   3'- gCCCGUCG---UGGuUUUUGugGACaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.