miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 22367 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 28523 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 64386 0.66 0.976047
Target:  5'- aGGGgAuGCGCC-----CACCUGUCUGa -3'
miRNA:   3'- gCCCgU-CGUGGuuuuuGUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 62313 0.66 0.976047
Target:  5'- uGGGagagccCAGCgagGCCAGAGACGCCg--CCGc -3'
miRNA:   3'- gCCC------GUCG---UGGUUUUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 16545 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 42782 0.66 0.976047
Target:  5'- uCGuGGCucGCGCCuccuGGACGCCauUGUCCc -3'
miRNA:   3'- -GC-CCGu-CGUGGuu--UUUGUGG--ACAGGc -5'
29079 3' -53.4 NC_006146.1 + 25779 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 22701 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 19623 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 28857 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 13467 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 102069 0.66 0.973434
Target:  5'- gGGGCaAGCACCAGuggccAACAUac-UCCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUu----UUGUGgacAGGC- -5'
29079 3' -53.4 NC_006146.1 + 54020 0.66 0.973434
Target:  5'- uGGaGCAgGCACUGcu-GCGCCUGgCCGg -3'
miRNA:   3'- gCC-CGU-CGUGGUuuuUGUGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 41762 0.66 0.973434
Target:  5'- uGGGCuuccCGCCGGAGGC-CCUGcgcCCGg -3'
miRNA:   3'- gCCCGuc--GUGGUUUUUGuGGACa--GGC- -5'
29079 3' -53.4 NC_006146.1 + 54611 0.66 0.973434
Target:  5'- gCGGG-GGCGCCAuccggcCGCCUcucugGUCCGg -3'
miRNA:   3'- -GCCCgUCGUGGUuuuu--GUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 123375 0.66 0.973434
Target:  5'- cCGaGGCGGCGCCcccGACACUg--CCGc -3'
miRNA:   3'- -GC-CCGUCGUGGuuuUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 157972 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 154894 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 151816 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 145661 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.