miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 151816 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 154894 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 157972 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 168528 0.66 0.970621
Target:  5'- -uGGaAGC-CCGcgGACGCCUGUCCc -3'
miRNA:   3'- gcCCgUCGuGGUuuUUGUGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 142583 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 93552 0.66 0.967601
Target:  5'- -aGGCAGCACacGAAGCcgGCCUcGUCCu -3'
miRNA:   3'- gcCCGUCGUGguUUUUG--UGGA-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 66780 0.66 0.967601
Target:  5'- aCGGGguGCgACCu-GGACACCggGcCCa -3'
miRNA:   3'- -GCCCguCG-UGGuuUUUGUGGa-CaGGc -5'
29079 3' -53.4 NC_006146.1 + 57881 0.66 0.967601
Target:  5'- cCGGGCcGacaGCCGGGuggaacGGCGCCUuGUCCa -3'
miRNA:   3'- -GCCCGuCg--UGGUUU------UUGUGGA-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 53623 0.66 0.967601
Target:  5'- cCGGGCcguGCACCGAcuGAUgguggggaACCUG-CCGa -3'
miRNA:   3'- -GCCCGu--CGUGGUUu-UUG--------UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 47525 0.66 0.967601
Target:  5'- aGcGGCAGUGUCGGGGGCGCCgccucgGUCCu -3'
miRNA:   3'- gC-CCGUCGUGGUUUUUGUGGa-----CAGGc -5'
29079 3' -53.4 NC_006146.1 + 157356 0.67 0.964368
Target:  5'- cCGGcGCccGGCGCCugcAGCAgguuCCUGUCCa -3'
miRNA:   3'- -GCC-CG--UCGUGGuuuUUGU----GGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 126247 0.67 0.964367
Target:  5'- uGGGacccaGGCGCCcgggcuugGGAGACGCCUcUCCa -3'
miRNA:   3'- gCCCg----UCGUGG--------UUUUUGUGGAcAGGc -5'
29079 3' -53.4 NC_006146.1 + 149629 0.67 0.964032
Target:  5'- cCGGGCguccgccAGCACCAGgucGAGCACgCg--CCGg -3'
miRNA:   3'- -GCCCG-------UCGUGGUU---UUUGUG-GacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 103448 0.67 0.963695
Target:  5'- gCGGaGCAcaugcGCACCuacuucacccgcGAGACuuACCUGUCCGa -3'
miRNA:   3'- -GCC-CGU-----CGUGGu-----------UUUUG--UGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 66450 0.67 0.960914
Target:  5'- --cGCAGCugccuGCCGAGGGCGCCgccccUGUCCa -3'
miRNA:   3'- gccCGUCG-----UGGUUUUUGUGG-----ACAGGc -5'
29079 3' -53.4 NC_006146.1 + 40110 0.67 0.960914
Target:  5'- cCGGaGcCGGCGCCuguuucuGGGACACC-GUCUGg -3'
miRNA:   3'- -GCC-C-GUCGUGGu------UUUUGUGGaCAGGC- -5'
29079 3' -53.4 NC_006146.1 + 142350 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 157739 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 56583 0.67 0.957236
Target:  5'- gGGGCggccgGGCGCCGAGccCGCCg--CCGg -3'
miRNA:   3'- gCCCG-----UCGUGGUUUuuGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 137699 0.67 0.957236
Target:  5'- cCGG--AGCACCAGGAGCACCcGgaggCCa -3'
miRNA:   3'- -GCCcgUCGUGGUUUUUGUGGaCa---GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.