miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 145428 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 142350 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 137699 0.67 0.957236
Target:  5'- cCGG--AGCACCAGGAGCACCcGgaggCCa -3'
miRNA:   3'- -GCCcgUCGUGGUUUUUGUGGaCa---GGc -5'
29079 3' -53.4 NC_006146.1 + 120770 0.67 0.956856
Target:  5'- -uGGCGGCGCCucaugucccuggcGGAGGuCGCCgGUCCGc -3'
miRNA:   3'- gcCCGUCGUGG-------------UUUUU-GUGGaCAGGC- -5'
29079 3' -53.4 NC_006146.1 + 66606 0.67 0.953329
Target:  5'- aGGG-AGCccuuuucuauaGCCAAGGACACCUacaaGUCCc -3'
miRNA:   3'- gCCCgUCG-----------UGGUUUUUGUGGA----CAGGc -5'
29079 3' -53.4 NC_006146.1 + 126794 0.67 0.953329
Target:  5'- cCGGGUucGGCGCCGAGcGCGCg-GcCCGa -3'
miRNA:   3'- -GCCCG--UCGUGGUUUuUGUGgaCaGGC- -5'
29079 3' -53.4 NC_006146.1 + 51546 0.67 0.952111
Target:  5'- gGGGCAGCcgccguacgugaugACCcuGGGCGCCg--CCGg -3'
miRNA:   3'- gCCCGUCG--------------UGGuuUUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 155316 0.67 0.944809
Target:  5'- -aGGCcGCGCCcucgccGAcGCGCCUGUCCu -3'
miRNA:   3'- gcCCGuCGUGGu-----UUuUGUGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 77922 0.67 0.944809
Target:  5'- gCGGGCGGCcucgcagguGCCGGGGGuCGCUguuugGUCUGg -3'
miRNA:   3'- -GCCCGUCG---------UGGUUUUU-GUGGa----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 109126 0.67 0.944809
Target:  5'- aCGaGGCugccgucuugGGCAUCAGcAGCACCUGcCCa -3'
miRNA:   3'- -GC-CCG----------UCGUGGUUuUUGUGGACaGGc -5'
29079 3' -53.4 NC_006146.1 + 46500 0.67 0.944809
Target:  5'- cCGGGCuugAGC-CCGGAGGCACuCUGggCGg -3'
miRNA:   3'- -GCCCG---UCGuGGUUUUUGUG-GACagGC- -5'
29079 3' -53.4 NC_006146.1 + 159629 0.68 0.940191
Target:  5'- gGGGCAcGCcuuCCGGGAACACCuccuUGUCg- -3'
miRNA:   3'- gCCCGU-CGu--GGUUUUUGUGG----ACAGgc -5'
29079 3' -53.4 NC_006146.1 + 71431 0.68 0.940191
Target:  5'- aGGGCgcggccGGCAUUuu-GGCACCUGgcgCCGa -3'
miRNA:   3'- gCCCG------UCGUGGuuuUUGUGGACa--GGC- -5'
29079 3' -53.4 NC_006146.1 + 64434 0.68 0.940191
Target:  5'- gGGGUcucGGCGCCGAGacagccuuggGugGCgCUGUCCu -3'
miRNA:   3'- gCCCG---UCGUGGUUU----------UugUG-GACAGGc -5'
29079 3' -53.4 NC_006146.1 + 154662 0.68 0.940191
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggaGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 43469 0.68 0.940191
Target:  5'- aGcGGCAGCcuccucggcgGCCGuuGACACCgGcUCCGg -3'
miRNA:   3'- gC-CCGUCG----------UGGUuuUUGUGGaC-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 4810 0.68 0.935331
Target:  5'- gGGGC-GCcucaACCGAuccauGCACgUGUCCGa -3'
miRNA:   3'- gCCCGuCG----UGGUUuu---UGUGgACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 139166 0.68 0.935331
Target:  5'- gGGGgGGCGCCuguGAGGCGgCUGUUg- -3'
miRNA:   3'- gCCCgUCGUGGu--UUUUGUgGACAGgc -5'
29079 3' -53.4 NC_006146.1 + 41222 0.68 0.930227
Target:  5'- uCGaGGCGGCGCUGAAGAgACCgGcCCu -3'
miRNA:   3'- -GC-CCGUCGUGGUUUUUgUGGaCaGGc -5'
29079 3' -53.4 NC_006146.1 + 156144 0.68 0.924878
Target:  5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3'
miRNA:   3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.