Results 81 - 100 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 156144 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 146910 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 143832 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 153066 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 149988 | 0.68 | 0.924878 |
Target: 5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3' miRNA: 3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 60600 | 0.68 | 0.919285 |
Target: 5'- aGGGCGGCGau--GAACGCCUacgCCGa -3' miRNA: 3'- gCCCGUCGUgguuUUUGUGGAca-GGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 164401 | 0.69 | 0.913449 |
Target: 5'- aGGGUcaggAGCAuCCAAGGAcCACCcgGUCCu -3' miRNA: 3'- gCCCG----UCGU-GGUUUUU-GUGGa-CAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 44216 | 0.69 | 0.913449 |
Target: 5'- gGGGCGGUGCCuuGGugACC-GUCUc -3' miRNA: 3'- gCCCGUCGUGGuuUUugUGGaCAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 95550 | 0.69 | 0.913449 |
Target: 5'- gGGGCAGCGuaugaCAugGACACCUGgaCGg -3' miRNA: 3'- gCCCGUCGUg----GUuuUUGUGGACagGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 56753 | 0.69 | 0.913449 |
Target: 5'- aGGGcCAGCAU-----GCGCCUgGUCCGg -3' miRNA: 3'- gCCC-GUCGUGguuuuUGUGGA-CAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 28573 | 0.69 | 0.913449 |
Target: 5'- cCGGGUguAGCGCCAGcGacagccgcuucACACCUGcCCu -3' miRNA: 3'- -GCCCG--UCGUGGUUuU-----------UGUGGACaGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 92087 | 0.69 | 0.913449 |
Target: 5'- gGGGCGGCccgGCCuGGGGCugCUG-CUGg -3' miRNA: 3'- gCCCGUCG---UGGuUUUUGugGACaGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 121876 | 0.69 | 0.913449 |
Target: 5'- uCGGGCcGCGCCccgGAGAACGCCcUGcggcUCCu -3' miRNA: 3'- -GCCCGuCGUGG---UUUUUGUGG-AC----AGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 93592 | 0.69 | 0.91165 |
Target: 5'- uGGGCAuGCGCgAcccgccgggcuccuGGGGCugCUGUCCu -3' miRNA: 3'- gCCCGU-CGUGgU--------------UUUUGugGACAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 130532 | 0.69 | 0.90737 |
Target: 5'- cCGGGCGGCgACCAGGGG-GCCUucUCCGc -3' miRNA: 3'- -GCCCGUCG-UGGUUUUUgUGGAc-AGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 47719 | 0.69 | 0.90737 |
Target: 5'- gGGaGCAGCGCCcGGAGCuCgUcGUCCGg -3' miRNA: 3'- gCC-CGUCGUGGuUUUUGuGgA-CAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 112978 | 0.69 | 0.906749 |
Target: 5'- -uGGCGGCGCCGGccAGCGCCcucugcaUGUCCu -3' miRNA: 3'- gcCCGUCGUGGUUu-UUGUGG-------ACAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 56135 | 0.69 | 0.90105 |
Target: 5'- gCGGGCcccgAG-ACCGAGAGCACCUccccgcggccGUCCu -3' miRNA: 3'- -GCCCG----UCgUGGUUUUUGUGGA----------CAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 141639 | 0.69 | 0.887701 |
Target: 5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3' miRNA: 3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 157028 | 0.69 | 0.887701 |
Target: 5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3' miRNA: 3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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