miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 4810 0.68 0.935331
Target:  5'- gGGGC-GCcucaACCGAuccauGCACgUGUCCGa -3'
miRNA:   3'- gCCCGuCG----UGGUUuu---UGUGgACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 10530 0.71 0.816858
Target:  5'- uGGGCGGCcuGCCAAGGGCGCUgagacgCCa -3'
miRNA:   3'- gCCCGUCG--UGGUUUUUGUGGaca---GGc -5'
29079 3' -53.4 NC_006146.1 + 12773 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 13133 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 13467 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 15161 0.66 0.978466
Target:  5'- uCGGGCGaCGCCGugGAAGCGCUgaaggCCGa -3'
miRNA:   3'- -GCCCGUcGUGGU--UUUUGUGGaca--GGC- -5'
29079 3' -53.4 NC_006146.1 + 15852 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 16211 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 16545 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 17696 0.72 0.780595
Target:  5'- aCGGGCGGCccguggcgGCCAA--GCGCCUGggggacguaaucUCCGu -3'
miRNA:   3'- -GCCCGUCG--------UGGUUuuUGUGGAC------------AGGC- -5'
29079 3' -53.4 NC_006146.1 + 18930 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 19255 0.66 0.978466
Target:  5'- aGGGCaAGCACCuuugaccgcAAGACccCCUG-CCGg -3'
miRNA:   3'- gCCCG-UCGUGGu--------UUUUGu-GGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 19289 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 19623 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 20424 0.72 0.793564
Target:  5'- aGGGaCGGCuACCAGGgggccacugucauccAGCcCCUGUCCGg -3'
miRNA:   3'- gCCC-GUCG-UGGUUU---------------UUGuGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 22007 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 22367 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 22701 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 23429 0.71 0.833156
Target:  5'- gGGGCAGUACCAcAAGCuccggcuGCCcGUCuCGg -3'
miRNA:   3'- gCCCGUCGUGGUuUUUG-------UGGaCAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 23724 0.7 0.86596
Target:  5'- cCGGGCgaaggGGCGCCGGucuGCGCCgccgCCGg -3'
miRNA:   3'- -GCCCG-----UCGUGGUUuu-UGUGGaca-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.