miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 24115 0.7 0.86596
Target:  5'- aGGGCggcuGGCACCGGGccugUACCUGUCgCGu -3'
miRNA:   3'- gCCCG----UCGUGGUUUuu--GUGGACAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 25085 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 25445 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 25779 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 28163 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 28523 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 28573 0.69 0.913449
Target:  5'- cCGGGUguAGCGCCAGcGacagccgcuucACACCUGcCCu -3'
miRNA:   3'- -GCCCG--UCGUGGUUuU-----------UGUGGACaGGc -5'
29079 3' -53.4 NC_006146.1 + 28857 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 32870 0.78 0.469615
Target:  5'- gCGGGCGGCGCgAGGucccugccuGGCACCaggGUCCGg -3'
miRNA:   3'- -GCCCGUCGUGgUUU---------UUGUGGa--CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 33384 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33477 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33570 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33663 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33756 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33849 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 33941 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34034 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34127 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34220 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 34313 0.75 0.619804
Target:  5'- gGGGCAGCGgacCCAGGGGCACCcGgcccCCGg -3'
miRNA:   3'- gCCCGUCGU---GGUUUUUGUGGaCa---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.