miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 43386 0.66 0.978466
Target:  5'- gGGGCAGCAgCGGcuGCcUCUGccCCGg -3'
miRNA:   3'- gCCCGUCGUgGUUuuUGuGGACa-GGC- -5'
29079 3' -53.4 NC_006146.1 + 43469 0.68 0.940191
Target:  5'- aGcGGCAGCcuccucggcgGCCGuuGACACCgGcUCCGg -3'
miRNA:   3'- gC-CCGUCG----------UGGUuuUUGUGGaC-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 44216 0.69 0.913449
Target:  5'- gGGGCGGUGCCuuGGugACC-GUCUc -3'
miRNA:   3'- gCCCGUCGUGGuuUUugUGGaCAGGc -5'
29079 3' -53.4 NC_006146.1 + 46500 0.67 0.944809
Target:  5'- cCGGGCuugAGC-CCGGAGGCACuCUGggCGg -3'
miRNA:   3'- -GCCCG---UCGuGGUUUUUGUG-GACagGC- -5'
29079 3' -53.4 NC_006146.1 + 47525 0.66 0.967601
Target:  5'- aGcGGCAGUGUCGGGGGCGCCgccucgGUCCu -3'
miRNA:   3'- gC-CCGUCGUGGUUUUUGUGGa-----CAGGc -5'
29079 3' -53.4 NC_006146.1 + 47719 0.69 0.90737
Target:  5'- gGGaGCAGCGCCcGGAGCuCgUcGUCCGg -3'
miRNA:   3'- gCC-CGUCGUGGuUUUUGuGgA-CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 51546 0.67 0.952111
Target:  5'- gGGGCAGCcgccguacgugaugACCcuGGGCGCCg--CCGg -3'
miRNA:   3'- gCCCGUCG--------------UGGuuUUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 53623 0.66 0.967601
Target:  5'- cCGGGCcguGCACCGAcuGAUgguggggaACCUG-CCGa -3'
miRNA:   3'- -GCCCGu--CGUGGUUu-UUG--------UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 54013 0.73 0.712262
Target:  5'- aGGGcCGGCACCAGGuGGCGCC--UCCGg -3'
miRNA:   3'- gCCC-GUCGUGGUUU-UUGUGGacAGGC- -5'
29079 3' -53.4 NC_006146.1 + 54020 0.66 0.973434
Target:  5'- uGGaGCAgGCACUGcu-GCGCCUGgCCGg -3'
miRNA:   3'- gCC-CGU-CGUGGUuuuUGUGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 54611 0.66 0.973434
Target:  5'- gCGGG-GGCGCCAuccggcCGCCUcucugGUCCGg -3'
miRNA:   3'- -GCCCgUCGUGGUuuuu--GUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 56135 0.69 0.90105
Target:  5'- gCGGGCcccgAG-ACCGAGAGCACCUccccgcggccGUCCu -3'
miRNA:   3'- -GCCCG----UCgUGGUUUUUGUGGA----------CAGGc -5'
29079 3' -53.4 NC_006146.1 + 56583 0.67 0.957236
Target:  5'- gGGGCggccgGGCGCCGAGccCGCCg--CCGg -3'
miRNA:   3'- gCCCG-----UCGUGGUUUuuGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 56753 0.69 0.913449
Target:  5'- aGGGcCAGCAU-----GCGCCUgGUCCGg -3'
miRNA:   3'- gCCC-GUCGUGguuuuUGUGGA-CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 57881 0.66 0.967601
Target:  5'- cCGGGCcGacaGCCGGGuggaacGGCGCCUuGUCCa -3'
miRNA:   3'- -GCCCGuCg--UGGUUU------UUGUGGA-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 60388 0.72 0.76161
Target:  5'- aGGuGCAGCGCCugGAGAACAUCUGcacccUCCu -3'
miRNA:   3'- gCC-CGUCGUGG--UUUUUGUGGAC-----AGGc -5'
29079 3' -53.4 NC_006146.1 + 60600 0.68 0.919285
Target:  5'- aGGGCGGCGau--GAACGCCUacgCCGa -3'
miRNA:   3'- gCCCGUCGUgguuUUUGUGGAca-GGC- -5'
29079 3' -53.4 NC_006146.1 + 61327 0.66 0.978466
Target:  5'- cCGGGUGGCcuaGCCGgcGAGGCACCUucaCCa -3'
miRNA:   3'- -GCCCGUCG---UGGU--UUUUGUGGAca-GGc -5'
29079 3' -53.4 NC_006146.1 + 62313 0.66 0.976047
Target:  5'- uGGGagagccCAGCgagGCCAGAGACGCCg--CCGc -3'
miRNA:   3'- gCCC------GUCG---UGGUUUUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 64386 0.66 0.976047
Target:  5'- aGGGgAuGCGCC-----CACCUGUCUGa -3'
miRNA:   3'- gCCCgU-CGUGGuuuuuGUGGACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.