miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 170763 0.72 0.751937
Target:  5'- aCGGGCAGCcauCCAG--GCGCCauaGUCCu -3'
miRNA:   3'- -GCCCGUCGu--GGUUuuUGUGGa--CAGGc -5'
29079 3' -53.4 NC_006146.1 + 170312 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 169381 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 168528 0.66 0.970621
Target:  5'- -uGGaAGC-CCGcgGACGCCUGUCCc -3'
miRNA:   3'- gcCCgUCGuGGUuuUUGUGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 168449 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 167517 0.66 0.978466
Target:  5'- aGGGCuGGCGCCGGGccGCGCCc--CCGg -3'
miRNA:   3'- gCCCG-UCGUGGUUUu-UGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 167176 0.71 0.808028
Target:  5'- aGGGCcacgcGGCccCCAGAGAC-CCUGUCUGu -3'
miRNA:   3'- gCCCG-----UCGu-GGUUUUUGuGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 166517 0.66 0.978466
Target:  5'- uCGGGCGGCuguGCCAA--GCGgCaggGUCCu -3'
miRNA:   3'- -GCCCGUCG---UGGUUuuUGUgGa--CAGGc -5'
29079 3' -53.4 NC_006146.1 + 164401 0.69 0.913449
Target:  5'- aGGGUcaggAGCAuCCAAGGAcCACCcgGUCCu -3'
miRNA:   3'- gCCCG----UCGU-GGUUUUU-GUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 163237 0.66 0.978466
Target:  5'- aGGGUAGCGcugcuCCAGGAACcCCggGUUCa -3'
miRNA:   3'- gCCCGUCGU-----GGUUUUUGuGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 160065 0.7 0.842287
Target:  5'- aGGaGCGGCACagucAGGCACCUGUggcCCGu -3'
miRNA:   3'- gCC-CGUCGUGguu-UUUGUGGACA---GGC- -5'
29079 3' -53.4 NC_006146.1 + 159629 0.68 0.940191
Target:  5'- gGGGCAcGCcuuCCGGGAACACCuccuUGUCg- -3'
miRNA:   3'- gCCCGU-CGu--GGUUUUUGUGG----ACAGgc -5'
29079 3' -53.4 NC_006146.1 + 157972 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 157739 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 157356 0.67 0.964368
Target:  5'- cCGGcGCccGGCGCCugcAGCAgguuCCUGUCCa -3'
miRNA:   3'- -GCC-CG--UCGUGGuuuUUGU----GGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 157028 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 156266 0.7 0.865961
Target:  5'- uGGGCAGCACCAuGAGCuCCc--CCa -3'
miRNA:   3'- gCCCGUCGUGGUuUUUGuGGacaGGc -5'
29079 3' -53.4 NC_006146.1 + 156144 0.68 0.924878
Target:  5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3'
miRNA:   3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 155316 0.67 0.944809
Target:  5'- -aGGCcGCGCCcucgccGAcGCGCCUGUCCu -3'
miRNA:   3'- gcCCGuCGUGGu-----UUuUGUGGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 154894 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.