miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 154662 0.68 0.940191
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggaGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 153950 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 153066 0.68 0.924878
Target:  5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3'
miRNA:   3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 151816 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 151689 0.7 0.880678
Target:  5'- aGGGCGGCGCCuuGGGGC-CCggaGUCuCGg -3'
miRNA:   3'- gCCCGUCGUGGu-UUUUGuGGa--CAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 151584 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 150872 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 149988 0.68 0.924878
Target:  5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3'
miRNA:   3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 149629 0.67 0.964032
Target:  5'- cCGGGCguccgccAGCACCAGgucGAGCACgCg--CCGg -3'
miRNA:   3'- -GCCCG-------UCGUGGUU---UUUGUG-GacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 148738 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 148506 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 147794 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 147501 0.66 0.979381
Target:  5'- -cGGCAGguCCAgcggaaggcaguuagAGAACGCCaGUCCc -3'
miRNA:   3'- gcCCGUCguGGU---------------UUUUGUGGaCAGGc -5'
29079 3' -53.4 NC_006146.1 + 146910 0.68 0.924878
Target:  5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3'
miRNA:   3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 146029 0.7 0.865961
Target:  5'- gGGGCAGCuCCu--GGCACUgcgcGUCCa -3'
miRNA:   3'- gCCCGUCGuGGuuuUUGUGGa---CAGGc -5'
29079 3' -53.4 NC_006146.1 + 145661 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 145428 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 144716 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 143832 0.68 0.924878
Target:  5'- gGGGCAGUGgucccccuccCUAGAAcuggcaauugGCugCUGUCCGg -3'
miRNA:   3'- gCCCGUCGU----------GGUUUU----------UGugGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 142583 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.