miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 142350 0.67 0.957236
Target:  5'- cCGGGCAG-GCCGGGucuuGgGCCUgggagGUCCGg -3'
miRNA:   3'- -GCCCGUCgUGGUUUu---UgUGGA-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 141639 0.69 0.887701
Target:  5'- uGGGCGGCugCGGGGgacgcuggcACACCgGgccgCCGg -3'
miRNA:   3'- gCCCGUCGugGUUUU---------UGUGGaCa---GGC- -5'
29079 3' -53.4 NC_006146.1 + 139359 0.73 0.702145
Target:  5'- gGGGCGGCGCCGgggGGggUGCCUG-CUGu -3'
miRNA:   3'- gCCCGUCGUGGU---UUuuGUGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 139166 0.68 0.935331
Target:  5'- gGGGgGGCGCCuguGAGGCGgCUGUUg- -3'
miRNA:   3'- gCCCgUCGUGGu--UUUUGUgGACAGgc -5'
29079 3' -53.4 NC_006146.1 + 138877 0.66 0.970621
Target:  5'- uGGGcCAGCGCCucgucccGAGGCcccUCUGUCCu -3'
miRNA:   3'- gCCC-GUCGUGGu------UUUUGu--GGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 137699 0.67 0.957236
Target:  5'- cCGG--AGCACCAGGAGCACCcGgaggCCa -3'
miRNA:   3'- -GCCcgUCGUGGUUUUUGUGGaCa---GGc -5'
29079 3' -53.4 NC_006146.1 + 136700 0.7 0.880678
Target:  5'- gCGGGCGGCGCgAGGucccuGCcugGCCcaggGUCCGg -3'
miRNA:   3'- -GCCCGUCGUGgUUUu----UG---UGGa---CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 134127 0.7 0.868974
Target:  5'- aGGGCgaAGCACCGAuuacauAAGCACaagugcacuuccccgCUGUCCa -3'
miRNA:   3'- gCCCG--UCGUGGUU------UUUGUG---------------GACAGGc -5'
29079 3' -53.4 NC_006146.1 + 130532 0.69 0.90737
Target:  5'- cCGGGCGGCgACCAGGGG-GCCUucUCCGc -3'
miRNA:   3'- -GCCCGUCG-UGGUUUUUgUGGAc-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 129986 0.66 0.978232
Target:  5'- -uGGCGGCcugaaacACCAAAAACugCaucgucGUCCGg -3'
miRNA:   3'- gcCCGUCG-------UGGUUUUUGugGa-----CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 128820 0.71 0.825517
Target:  5'- gGGGCGGCGgCAGAGGggguCAcCCUGUCgCGa -3'
miRNA:   3'- gCCCGUCGUgGUUUUU----GU-GGACAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 128199 0.66 0.970621
Target:  5'- aGGGgGGCGCCGc-GGCGCCgggCCa -3'
miRNA:   3'- gCCCgUCGUGGUuuUUGUGGacaGGc -5'
29079 3' -53.4 NC_006146.1 + 128124 0.69 0.887701
Target:  5'- cCGaGGCGGCcacgcGCCGccuGCACCUGUCgGc -3'
miRNA:   3'- -GC-CCGUCG-----UGGUuuuUGUGGACAGgC- -5'
29079 3' -53.4 NC_006146.1 + 127624 0.73 0.742156
Target:  5'- uGGGCGGCACCGccGGCccgcuGCCUcuuGUCCa -3'
miRNA:   3'- gCCCGUCGUGGUuuUUG-----UGGA---CAGGc -5'
29079 3' -53.4 NC_006146.1 + 127561 0.7 0.850383
Target:  5'- aCGGGCuGCGCCugcuGGC-CCUGggcggCCGa -3'
miRNA:   3'- -GCCCGuCGUGGuuu-UUGuGGACa----GGC- -5'
29079 3' -53.4 NC_006146.1 + 126794 0.67 0.953329
Target:  5'- cCGGGUucGGCGCCGAGcGCGCg-GcCCGa -3'
miRNA:   3'- -GCCCG--UCGUGGUUUuUGUGgaCaGGC- -5'
29079 3' -53.4 NC_006146.1 + 126247 0.67 0.964367
Target:  5'- uGGGacccaGGCGCCcgggcuugGGAGACGCCUcUCCa -3'
miRNA:   3'- gCCCg----UCGUGG--------UUUUUGUGGAcAGGc -5'
29079 3' -53.4 NC_006146.1 + 123375 0.66 0.973434
Target:  5'- cCGaGGCGGCGCCcccGACACUg--CCGc -3'
miRNA:   3'- -GC-CCGUCGUGGuuuUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 121876 0.69 0.913449
Target:  5'- uCGGGCcGCGCCccgGAGAACGCCcUGcggcUCCu -3'
miRNA:   3'- -GCCCGuCGUGG---UUUUUGUGG-AC----AGGc -5'
29079 3' -53.4 NC_006146.1 + 120770 0.67 0.956856
Target:  5'- -uGGCGGCGCCucaugucccuggcGGAGGuCGCCgGUCCGc -3'
miRNA:   3'- gcCCGUCGUGG-------------UUUUU-GUGGaCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.