miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 108395 1.09 0.005603
Target:  5'- cCGGGCAGCACCAAAAACACCUGUCCGu -3'
miRNA:   3'- -GCCCGUCGUGGUUUUUGUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 56135 0.69 0.90105
Target:  5'- gCGGGCcccgAG-ACCGAGAGCACCUccccgcggccGUCCu -3'
miRNA:   3'- -GCCCG----UCgUGGUUUUUGUGGA----------CAGGc -5'
29079 3' -53.4 NC_006146.1 + 47719 0.69 0.90737
Target:  5'- gGGaGCAGCGCCcGGAGCuCgUcGUCCGg -3'
miRNA:   3'- gCC-CGUCGUGGuUUUUGuGgA-CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 147501 0.66 0.979381
Target:  5'- -cGGCAGguCCAgcggaaggcaguuagAGAACGCCaGUCCc -3'
miRNA:   3'- gcCCGUCguGGU---------------UUUUGUGGaCAGGc -5'
29079 3' -53.4 NC_006146.1 + 12773 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 15852 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 22007 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 25085 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 67095 0.72 0.780595
Target:  5'- -cGGCGGcCACCAucacaAAGuauCGCCUGUCCGc -3'
miRNA:   3'- gcCCGUC-GUGGU-----UUUu--GUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 128124 0.69 0.887701
Target:  5'- cCGaGGCGGCcacgcGCCGccuGCACCUGUCgGc -3'
miRNA:   3'- -GC-CCGUCG-----UGGUuuuUGUGGACAGgC- -5'
29079 3' -53.4 NC_006146.1 + 86270 0.7 0.865961
Target:  5'- uGGGCAGCACgGcgcuCACguagcuccuCUGUCCGg -3'
miRNA:   3'- gCCCGUCGUGgUuuuuGUG---------GACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 96905 0.72 0.760648
Target:  5'- aCGGGCAGCACCuccuccgcgaucgAGAAGCugUUcaacuccccGUCCGc -3'
miRNA:   3'- -GCCCGUCGUGG-------------UUUUUGugGA---------CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 120701 0.81 0.325034
Target:  5'- aCGGGCGGaCGCUGGAgcAGCACCUGaUCCGg -3'
miRNA:   3'- -GCCCGUC-GUGGUUU--UUGUGGAC-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 146029 0.7 0.865961
Target:  5'- gGGGCAGCuCCu--GGCACUgcgcGUCCa -3'
miRNA:   3'- gCCCGUCGuGGuuuUUGUGGa---CAGGc -5'
29079 3' -53.4 NC_006146.1 + 114408 0.78 0.432583
Target:  5'- uGGGCAGCACCAuggggAAAACAa-UGUCCa -3'
miRNA:   3'- gCCCGUCGUGGU-----UUUUGUggACAGGc -5'
29079 3' -53.4 NC_006146.1 + 28163 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 156266 0.7 0.865961
Target:  5'- uGGGCAGCACCAuGAGCuCCc--CCa -3'
miRNA:   3'- gCCCGUCGUGGUuUUUGuGGacaGGc -5'
29079 3' -53.4 NC_006146.1 + 112978 0.69 0.906749
Target:  5'- -uGGCGGCGCCGGccAGCGCCcucugcaUGUCCu -3'
miRNA:   3'- gcCCGUCGUGGUUu-UUGUGG-------ACAGGc -5'
29079 3' -53.4 NC_006146.1 + 54013 0.73 0.712262
Target:  5'- aGGGcCGGCACCAGGuGGCGCC--UCCGg -3'
miRNA:   3'- gCCC-GUCGUGGUUU-UUGUGGacAGGC- -5'
29079 3' -53.4 NC_006146.1 + 18930 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.