miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 164401 0.69 0.913449
Target:  5'- aGGGUcaggAGCAuCCAAGGAcCACCcgGUCCu -3'
miRNA:   3'- gCCCG----UCGU-GGUUUUU-GUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 47719 0.69 0.90737
Target:  5'- gGGaGCAGCGCCcGGAGCuCgUcGUCCGg -3'
miRNA:   3'- gCC-CGUCGUGGuUUUUGuGgA-CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 96905 0.72 0.760648
Target:  5'- aCGGGCAGCACCuccuccgcgaucgAGAAGCugUUcaacuccccGUCCGc -3'
miRNA:   3'- -GCCCGUCGUGG-------------UUUUUGugGA---------CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 54013 0.73 0.712262
Target:  5'- aGGGcCGGCACCAGGuGGCGCC--UCCGg -3'
miRNA:   3'- gCCC-GUCGUGGUUU-UUGUGGacAGGC- -5'
29079 3' -53.4 NC_006146.1 + 157356 0.67 0.964368
Target:  5'- cCGGcGCccGGCGCCugcAGCAgguuCCUGUCCa -3'
miRNA:   3'- -GCC-CG--UCGUGGuuuUUGU----GGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 43469 0.68 0.940191
Target:  5'- aGcGGCAGCcuccucggcgGCCGuuGACACCgGcUCCGg -3'
miRNA:   3'- gC-CCGUCG----------UGGUuuUUGUGGaC-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 56135 0.69 0.90105
Target:  5'- gCGGGCcccgAG-ACCGAGAGCACCUccccgcggccGUCCu -3'
miRNA:   3'- -GCCCG----UCgUGGUUUUUGUGGA----------CAGGc -5'
29079 3' -53.4 NC_006146.1 + 114408 0.78 0.432583
Target:  5'- uGGGCAGCACCAuggggAAAACAa-UGUCCa -3'
miRNA:   3'- gCCCGUCGUGGU-----UUUUGUggACAGGc -5'
29079 3' -53.4 NC_006146.1 + 139166 0.68 0.935331
Target:  5'- gGGGgGGCGCCuguGAGGCGgCUGUUg- -3'
miRNA:   3'- gCCCgUCGUGGu--UUUUGUgGACAGgc -5'
29079 3' -53.4 NC_006146.1 + 120701 0.81 0.325034
Target:  5'- aCGGGCGGaCGCUGGAgcAGCACCUGaUCCGg -3'
miRNA:   3'- -GCCCGUC-GUGGUUU--UUGUGGAC-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 112978 0.69 0.906749
Target:  5'- -uGGCGGCGCCGGccAGCGCCcucugcaUGUCCu -3'
miRNA:   3'- gcCCGUCGUGGUUu-UUGUGG-------ACAGGc -5'
29079 3' -53.4 NC_006146.1 + 44216 0.69 0.913449
Target:  5'- gGGGCGGUGCCuuGGugACC-GUCUc -3'
miRNA:   3'- gCCCGUCGUGGuuUUugUGGaCAGGc -5'
29079 3' -53.4 NC_006146.1 + 146029 0.7 0.865961
Target:  5'- gGGGCAGCuCCu--GGCACUgcgcGUCCa -3'
miRNA:   3'- gCCCGUCGuGGuuuUUGUGGa---CAGGc -5'
29079 3' -53.4 NC_006146.1 + 67095 0.72 0.780595
Target:  5'- -cGGCGGcCACCAucacaAAGuauCGCCUGUCCGc -3'
miRNA:   3'- gcCCGUC-GUGGU-----UUUu--GUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 22007 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 12773 0.73 0.722309
Target:  5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3'
miRNA:   3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 138877 0.66 0.970621
Target:  5'- uGGGcCAGCGCCucgucccGAGGCcccUCUGUCCu -3'
miRNA:   3'- gCCC-GUCGUGGu------UUUUGu--GGACAGGc -5'
29079 3' -53.4 NC_006146.1 + 66780 0.66 0.967601
Target:  5'- aCGGGguGCgACCu-GGACACCggGcCCa -3'
miRNA:   3'- -GCCCguCG-UGGuuUUUGUGGa-CaGGc -5'
29079 3' -53.4 NC_006146.1 + 40110 0.67 0.960914
Target:  5'- cCGGaGcCGGCGCCuguuucuGGGACACC-GUCUGg -3'
miRNA:   3'- -GCC-C-GUCGUGGu------UUUUGUGGaCAGGC- -5'
29079 3' -53.4 NC_006146.1 + 159629 0.68 0.940191
Target:  5'- gGGGCAcGCcuuCCGGGAACACCuccuUGUCg- -3'
miRNA:   3'- gCCCGU-CGu--GGUUUUUGUGG----ACAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.