Results 41 - 60 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29079 | 3' | -53.4 | NC_006146.1 | + | 149629 | 0.67 | 0.964032 |
Target: 5'- cCGGGCguccgccAGCACCAGgucGAGCACgCg--CCGg -3' miRNA: 3'- -GCCCG-------UCGUGGUU---UUUGUG-GacaGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 56135 | 0.69 | 0.90105 |
Target: 5'- gCGGGCcccgAG-ACCGAGAGCACCUccccgcggccGUCCu -3' miRNA: 3'- -GCCCG----UCgUGGUUUUUGUGGA----------CAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 114408 | 0.78 | 0.432583 |
Target: 5'- uGGGCAGCACCAuggggAAAACAa-UGUCCa -3' miRNA: 3'- gCCCGUCGUGGU-----UUUUGUggACAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 66450 | 0.67 | 0.960914 |
Target: 5'- --cGCAGCugccuGCCGAGGGCGCCgccccUGUCCa -3' miRNA: 3'- gccCGUCG-----UGGUUUUUGUGG-----ACAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 120701 | 0.81 | 0.325034 |
Target: 5'- aCGGGCGGaCGCUGGAgcAGCACCUGaUCCGg -3' miRNA: 3'- -GCCCGUC-GUGGUUU--UUGUGGAC-AGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 43386 | 0.66 | 0.978466 |
Target: 5'- gGGGCAGCAgCGGcuGCcUCUGccCCGg -3' miRNA: 3'- gCCCGUCGUgGUUuuUGuGGACa-GGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 12773 | 0.73 | 0.722309 |
Target: 5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3' miRNA: 3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 22367 | 0.66 | 0.97776 |
Target: 5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3' miRNA: 3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 13133 | 0.66 | 0.97776 |
Target: 5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3' miRNA: 3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 16545 | 0.66 | 0.976047 |
Target: 5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3' miRNA: 3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 62313 | 0.66 | 0.976047 |
Target: 5'- uGGGagagccCAGCgagGCCAGAGACGCCg--CCGc -3' miRNA: 3'- gCCC------GUCG---UGGUUUUUGUGGacaGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 138877 | 0.66 | 0.970621 |
Target: 5'- uGGGcCAGCGCCucgucccGAGGCcccUCUGUCCu -3' miRNA: 3'- gCCC-GUCGUGGu------UUUUGu--GGACAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 66780 | 0.66 | 0.967601 |
Target: 5'- aCGGGguGCgACCu-GGACACCggGcCCa -3' miRNA: 3'- -GCCCguCG-UGGuuUUUGUGGa-CaGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 155316 | 0.67 | 0.944809 |
Target: 5'- -aGGCcGCGCCcucgccGAcGCGCCUGUCCu -3' miRNA: 3'- gcCCGuCGUGGu-----UUuUGUGGACAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 139166 | 0.68 | 0.935331 |
Target: 5'- gGGGgGGCGCCuguGAGGCGgCUGUUg- -3' miRNA: 3'- gCCCgUCGUGGu--UUUUGUgGACAGgc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 164401 | 0.69 | 0.913449 |
Target: 5'- aGGGUcaggAGCAuCCAAGGAcCACCcgGUCCu -3' miRNA: 3'- gCCCG----UCGU-GGUUUUU-GUGGa-CAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 47719 | 0.69 | 0.90737 |
Target: 5'- gGGaGCAGCGCCcGGAGCuCgUcGUCCGg -3' miRNA: 3'- gCC-CGUCGUGGuUUUUGuGgA-CAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 146029 | 0.7 | 0.865961 |
Target: 5'- gGGGCAGCuCCu--GGCACUgcgcGUCCa -3' miRNA: 3'- gCCCGUCGuGGuuuUUGUGGa---CAGGc -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 67095 | 0.72 | 0.780595 |
Target: 5'- -cGGCGGcCACCAucacaAAGuauCGCCUGUCCGc -3' miRNA: 3'- gcCCGUC-GUGGU-----UUUu--GUGGACAGGC- -5' |
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29079 | 3' | -53.4 | NC_006146.1 | + | 22007 | 0.73 | 0.722309 |
Target: 5'- gCGGGCGcCACCAGGucccAACACCcgGUCCc -3' miRNA: 3'- -GCCCGUcGUGGUUU----UUGUGGa-CAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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