miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 3' -53.4 NC_006146.1 + 160065 0.7 0.842287
Target:  5'- aGGaGCGGCACagucAGGCACCUGUggcCCGu -3'
miRNA:   3'- gCC-CGUCGUGguu-UUUGUGGACA---GGC- -5'
29079 3' -53.4 NC_006146.1 + 156266 0.7 0.865961
Target:  5'- uGGGCAGCACCAuGAGCuCCc--CCa -3'
miRNA:   3'- gCCCGUCGUGGUuUUUGuGGacaGGc -5'
29079 3' -53.4 NC_006146.1 + 130532 0.69 0.90737
Target:  5'- cCGGGCGGCgACCAGGGG-GCCUucUCCGc -3'
miRNA:   3'- -GCCCGUCG-UGGUUUUUgUGGAc-AGGC- -5'
29079 3' -53.4 NC_006146.1 + 22367 0.66 0.97776
Target:  5'- gGGGCAGCAggcucaacaccCCGGAccucccaggcccaaGACccgGCCUGcCCGg -3'
miRNA:   3'- gCCCGUCGU-----------GGUUU--------------UUG---UGGACaGGC- -5'
29079 3' -53.4 NC_006146.1 + 13467 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 22701 0.66 0.976047
Target:  5'- cCGGGUGGCcCCAGAGGC-CaaaGUCCu -3'
miRNA:   3'- -GCCCGUCGuGGUUUUUGuGga-CAGGc -5'
29079 3' -53.4 NC_006146.1 + 23724 0.7 0.86596
Target:  5'- cCGGGCgaaggGGCGCCGGucuGCGCCgccgCCGg -3'
miRNA:   3'- -GCCCG-----UCGUGGUUuu-UGUGGaca-GGC- -5'
29079 3' -53.4 NC_006146.1 + 151689 0.7 0.880678
Target:  5'- aGGGCGGCGCCuuGGGGC-CCggaGUCuCGg -3'
miRNA:   3'- gCCCGUCGUGGu-UUUUGuGGa--CAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 136700 0.7 0.880678
Target:  5'- gCGGGCGGCGCgAGGucccuGCcugGCCcaggGUCCGg -3'
miRNA:   3'- -GCCCGUCGUGgUUUu----UG---UGGa---CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 134127 0.7 0.868974
Target:  5'- aGGGCgaAGCACCGAuuacauAAGCACaagugcacuuccccgCUGUCCa -3'
miRNA:   3'- gCCCG--UCGUGGUU------UUUGUG---------------GACAGGc -5'
29079 3' -53.4 NC_006146.1 + 51546 0.67 0.952111
Target:  5'- gGGGCAGCcgccguacgugaugACCcuGGGCGCCg--CCGg -3'
miRNA:   3'- gCCCGUCG--------------UGGuuUUUGUGGacaGGC- -5'
29079 3' -53.4 NC_006146.1 + 24115 0.7 0.86596
Target:  5'- aGGGCggcuGGCACCGGGccugUACCUGUCgCGu -3'
miRNA:   3'- gCCCG----UCGUGGUUUuu--GUGGACAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 64386 0.66 0.976047
Target:  5'- aGGGgAuGCGCC-----CACCUGUCUGa -3'
miRNA:   3'- gCCCgU-CGUGGuuuuuGUGGACAGGC- -5'
29079 3' -53.4 NC_006146.1 + 66606 0.67 0.953329
Target:  5'- aGGG-AGCccuuuucuauaGCCAAGGACACCUacaaGUCCc -3'
miRNA:   3'- gCCCgUCG-----------UGGUUUUUGUGGA----CAGGc -5'
29079 3' -53.4 NC_006146.1 + 126794 0.67 0.953329
Target:  5'- cCGGGUucGGCGCCGAGcGCGCg-GcCCGa -3'
miRNA:   3'- -GCCCG--UCGUGGUUUuUGUGgaCaGGC- -5'
29079 3' -53.4 NC_006146.1 + 120770 0.67 0.956856
Target:  5'- -uGGCGGCGCCucaugucccuggcGGAGGuCGCCgGUCCGc -3'
miRNA:   3'- gcCCGUCGUGG-------------UUUUU-GUGGaCAGGC- -5'
29079 3' -53.4 NC_006146.1 + 23429 0.71 0.833156
Target:  5'- gGGGCAGUACCAcAAGCuccggcuGCCcGUCuCGg -3'
miRNA:   3'- gCCCGUCGUGGUuUUUG-------UGGaCAG-GC- -5'
29079 3' -53.4 NC_006146.1 + 75262 0.71 0.82893
Target:  5'- uGGGguGCACgGGGAugGCCgaggagccgagagcGUCCGg -3'
miRNA:   3'- gCCCguCGUGgUUUUugUGGa-------------CAGGC- -5'
29079 3' -53.4 NC_006146.1 + 148738 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5'
29079 3' -53.4 NC_006146.1 + 145661 0.66 0.970621
Target:  5'- cCGGGCGGgGCCAgggccuccaGAGGCACCaGgcucaCCa -3'
miRNA:   3'- -GCCCGUCgUGGU---------UUUUGUGGaCa----GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.