miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 157112 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 15942 0.66 0.669476
Target:  5'- gGGCgaGGCUGGGUGGcuGgGCAG-GCCgGUc -3'
miRNA:   3'- -CCG--CCGGUCCACC--UgCGUCaCGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 53342 0.66 0.669476
Target:  5'- cGGCGGCCGcGGgGcGGCGUgaGGUcuuggcugGCCCGg -3'
miRNA:   3'- -CCGCCGGU-CCaC-CUGCG--UCA--------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 137225 0.66 0.669476
Target:  5'- aGGaaGCCGGGUGGGgGCcuggGGU-CCCGg -3'
miRNA:   3'- -CCgcCGGUCCACCUgCG----UCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 141722 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 144800 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 147878 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 150956 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 154034 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 55933 0.66 0.659799
Target:  5'- cGCGGCC--GUGGGCuGCugcGUGCCCc- -3'
miRNA:   3'- cCGCCGGucCACCUG-CGu--CACGGGca -5'
29079 5' -62.7 NC_006146.1 + 156205 0.66 0.659799
Target:  5'- gGGaCcGCCAGGUGGuugcaggagACGCGG-GCCCc- -3'
miRNA:   3'- -CC-GcCGGUCCACC---------UGCGUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 42287 0.66 0.659799
Target:  5'- uGGUGGCgGGGaGGAggagcgggagcCGgAGUGCCCu- -3'
miRNA:   3'- -CCGCCGgUCCaCCU-----------GCgUCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 161754 0.66 0.656891
Target:  5'- uGGCGGCUgAGGUccgagggggcgccuGGGCGgGG-GCCUGa -3'
miRNA:   3'- -CCGCCGG-UCCA--------------CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135789 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135511 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135232 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135325 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135882 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 165806 0.66 0.650101
Target:  5'- cGGcCGGCUAGGgGGGCGUcccugGCCgCGUg -3'
miRNA:   3'- -CC-GCCGGUCCaCCUGCGuca--CGG-GCA- -5'
29079 5' -62.7 NC_006146.1 + 115697 0.66 0.650101
Target:  5'- aGGCGGCCgacAGGa-GACGCuc-GCCCGc -3'
miRNA:   3'- -CCGCCGG---UCCacCUGCGucaCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.