miRNA display CGI


Results 1 - 20 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 53342 0.66 0.669476
Target:  5'- cGGCGGCCGcGGgGcGGCGUgaGGUcuuggcugGCCCGg -3'
miRNA:   3'- -CCGCCGGU-CCaC-CUGCG--UCA--------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 41054 0.66 0.64039
Target:  5'- cGGCGGCCcugggggccucgGGGUGGAgGgAG-GCCa-- -3'
miRNA:   3'- -CCGCCGG------------UCCACCUgCgUCaCGGgca -5'
29079 5' -62.7 NC_006146.1 + 126813 0.66 0.630673
Target:  5'- cGCGGCCcgAGGUGGAaccacccCAGU-CCCGg -3'
miRNA:   3'- cCGCCGG--UCCACCUgc-----GUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 105195 0.66 0.630673
Target:  5'- cGgGGCCGGGgagccggGGGUGCccGGUGCCUGa -3'
miRNA:   3'- cCgCCGGUCCa------CCUGCG--UCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 86340 0.66 0.630673
Target:  5'- aGGCcaGCCAuuGGUGGAgGUGGaUGCCCa- -3'
miRNA:   3'- -CCGc-CGGU--CCACCUgCGUC-ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 44578 0.66 0.630673
Target:  5'- uGGCGgaaauGCCAGGaGGACG-AGUcGCCUGa -3'
miRNA:   3'- -CCGC-----CGGUCCaCCUGCgUCA-CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 137718 0.66 0.630673
Target:  5'- cGGaGGCCAGGaccgagcgGcGGCGCggcGGUGCCCa- -3'
miRNA:   3'- -CCgCCGGUCCa-------C-CUGCG---UCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 43635 0.66 0.630673
Target:  5'- gGGCGGCgGGGcgUGGcCGCcuGGggagagggGCCCGg -3'
miRNA:   3'- -CCGCCGgUCC--ACCuGCG--UCa-------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 123037 0.66 0.620958
Target:  5'- aGGCGGcCCAGGUccGGGCGCuGgaggagaggGUCCu- -3'
miRNA:   3'- -CCGCC-GGUCCA--CCUGCGuCa--------CGGGca -5'
29079 5' -62.7 NC_006146.1 + 73058 0.66 0.644275
Target:  5'- cGGCGGCCcccuccuccaggucGugguacuucaccagGGUGGACaGCAGcGUCCGg -3'
miRNA:   3'- -CCGCCGG--------------U--------------CCACCUG-CGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 165806 0.66 0.650101
Target:  5'- cGGcCGGCUAGGgGGGCGUcccugGCCgCGUg -3'
miRNA:   3'- -CC-GCCGGUCCaCCUGCGuca--CGG-GCA- -5'
29079 5' -62.7 NC_006146.1 + 53598 0.66 0.650101
Target:  5'- gGGauGCCGGGgaaaGGGCGCGGcaccgGgCCGUg -3'
miRNA:   3'- -CCgcCGGUCCa---CCUGCGUCa----CgGGCA- -5'
29079 5' -62.7 NC_006146.1 + 154034 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 150956 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 147878 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 144800 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 141722 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 137225 0.66 0.669476
Target:  5'- aGGaaGCCGGGUGGGgGCcuggGGU-CCCGg -3'
miRNA:   3'- -CCgcCGGUCCACCUgCG----UCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 161754 0.66 0.656891
Target:  5'- uGGCGGCUgAGGUccgagggggcgccuGGGCGgGG-GCCUGa -3'
miRNA:   3'- -CCGCCGG-UCCA--------------CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 115697 0.66 0.650101
Target:  5'- aGGCGGCCgacAGGa-GACGCuc-GCCCGc -3'
miRNA:   3'- -CCGCCGG---UCCacCUGCGucaCGGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.