miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 141722 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 144800 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 147878 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 150956 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 154034 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 105195 0.66 0.630673
Target:  5'- cGgGGCCGGGgagccggGGGUGCccGGUGCCUGa -3'
miRNA:   3'- cCgCCGGUCCa------CCUGCG--UCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 86340 0.66 0.630673
Target:  5'- aGGCcaGCCAuuGGUGGAgGUGGaUGCCCa- -3'
miRNA:   3'- -CCGc-CGGU--CCACCUgCGUC-ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 137183 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136904 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135789 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 142878 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 145956 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 149034 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 152112 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 155190 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 158269 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 123037 0.66 0.620958
Target:  5'- aGGCGGcCCAGGUccGGGCGCuGgaggagaggGUCCu- -3'
miRNA:   3'- -CCGCC-GGUCCA--CCUGCGuCa--------CGGGca -5'
29079 5' -62.7 NC_006146.1 + 43635 0.66 0.630673
Target:  5'- gGGCGGCgGGGcgUGGcCGCcuGGggagagggGCCCGg -3'
miRNA:   3'- -CCGCCGgUCC--ACCuGCG--UCa-------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 137718 0.66 0.630673
Target:  5'- cGGaGGCCAGGaccgagcgGcGGCGCggcGGUGCCCa- -3'
miRNA:   3'- -CCgCCGGUCCa-------C-CUGCG---UCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 44578 0.66 0.630673
Target:  5'- uGGCGgaaauGCCAGGaGGACG-AGUcGCCUGa -3'
miRNA:   3'- -CCGC-----CGGUCCaCCUGCgUCA-CGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.