miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 155190 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 46722 0.66 0.630673
Target:  5'- cGGCGGCUccgAGGcGGGCGgAG-GCCaCGc -3'
miRNA:   3'- -CCGCCGG---UCCaCCUGCgUCaCGG-GCa -5'
29079 5' -62.7 NC_006146.1 + 142878 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 158269 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 55933 0.66 0.659799
Target:  5'- cGCGGCC--GUGGGCuGCugcGUGCCCc- -3'
miRNA:   3'- cCGCCGGucCACCUG-CGu--CACGGGca -5'
29079 5' -62.7 NC_006146.1 + 54418 0.67 0.582236
Target:  5'- uGCGGCCuggGGGUGGACuuuCAGaacgugGCCCa- -3'
miRNA:   3'- cCGCCGG---UCCACCUGc--GUCa-----CGGGca -5'
29079 5' -62.7 NC_006146.1 + 170417 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 167622 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 47014 0.67 0.591883
Target:  5'- aGCGGCCcGGUcGGAcuCGCGGgcGCCCu- -3'
miRNA:   3'- cCGCCGGuCCA-CCU--GCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 109505 0.67 0.582236
Target:  5'- gGGCGGCCAcGUGGAagggauUGUAGaGCuCCGg -3'
miRNA:   3'- -CCGCCGGUcCACCU------GCGUCaCG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 165309 0.67 0.582236
Target:  5'- uGGCGGCCgucGGGUGa--GCAGaGCCCc- -3'
miRNA:   3'- -CCGCCGG---UCCACcugCGUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 68111 0.67 0.572621
Target:  5'- gGGCGGCCAGccGGucCGCGGUGagCGg -3'
miRNA:   3'- -CCGCCGGUCcaCCu-GCGUCACggGCa -5'
29079 5' -62.7 NC_006146.1 + 169486 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 76385 0.67 0.582236
Target:  5'- gGGCGcGCCGGGggagGGAC-CGGggGCgCCGa -3'
miRNA:   3'- -CCGC-CGGUCCa---CCUGcGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 15976 0.67 0.563045
Target:  5'- gGGCGuucccugcGCCugcgaaGGGcGGACGCGGUcaGCCCGg -3'
miRNA:   3'- -CCGC--------CGG------UCCaCCUGCGUCA--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 168554 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 139129 0.67 0.601556
Target:  5'- uGGCuccgauGGCgCAGGUGGGgGCAGUGUUg-- -3'
miRNA:   3'- -CCG------CCG-GUCCACCUgCGUCACGGgca -5'
29079 5' -62.7 NC_006146.1 + 115121 0.67 0.601556
Target:  5'- cGCuGGCCAGcGUGGugGCcucgcUGCCCc- -3'
miRNA:   3'- cCG-CCGGUC-CACCugCGuc---ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 68792 0.67 0.595749
Target:  5'- --aGGCUGGGUGGAUGgCAGUGggaacacacauggaaCCCGg -3'
miRNA:   3'- ccgCCGGUCCACCUGC-GUCAC---------------GGGCa -5'
29079 5' -62.7 NC_006146.1 + 33474 0.67 0.572621
Target:  5'- uGGgGGUCGGGaagggagGGGCGUGGUcCCCGg -3'
miRNA:   3'- -CCgCCGGUCCa------CCUGCGUCAcGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.