miRNA display CGI


Results 81 - 100 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 68792 0.67 0.595749
Target:  5'- --aGGCUGGGUGGAUGgCAGUGggaacacacauggaaCCCGg -3'
miRNA:   3'- ccgCCGGUCCACCUGC-GUCAC---------------GGGCa -5'
29079 5' -62.7 NC_006146.1 + 115121 0.67 0.601556
Target:  5'- cGCuGGCCAGcGUGGugGCcucgcUGCCCc- -3'
miRNA:   3'- cCG-CCGGUC-CACCugCGuc---ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 139129 0.67 0.601556
Target:  5'- uGGCuccgauGGCgCAGGUGGGgGCAGUGUUg-- -3'
miRNA:   3'- -CCG------CCG-GUCCACCUgCGUCACGGgca -5'
29079 5' -62.7 NC_006146.1 + 114953 0.67 0.601556
Target:  5'- gGGCGGCgauggCGGGgGGcACGCAGcaGCCCa- -3'
miRNA:   3'- -CCGCCG-----GUCCaCC-UGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 135697 0.67 0.601556
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGUc -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 168554 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 170417 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 169486 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 123700 0.68 0.493853
Target:  5'- aGGCGGCCAGGggccuggcgcucgGGGCGgCGGcggGCUCu- -3'
miRNA:   3'- -CCGCCGGUCCa------------CCUGC-GUCa--CGGGca -5'
29079 5' -62.7 NC_006146.1 + 39832 0.68 0.496587
Target:  5'- cGGCGGCCucggccgcacaguGGGccggcGGGgGCuguGUGCCCGg -3'
miRNA:   3'- -CCGCCGG-------------UCCa----CCUgCGu--CACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 140688 0.68 0.544027
Target:  5'- -cCGGCCAgcccGGcGGGCGCAGcgGCCCu- -3'
miRNA:   3'- ccGCCGGU----CCaCCUGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 166140 0.68 0.544027
Target:  5'- cGGUGGCaaAGGUGGACcaGGUGCUCa- -3'
miRNA:   3'- -CCGCCGg-UCCACCUGcgUCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 51833 0.68 0.534596
Target:  5'- gGGCGGCguGGagggGGGCuCGGggccugGCCCGa -3'
miRNA:   3'- -CCGCCGguCCa---CCUGcGUCa-----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33958 0.68 0.538362
Target:  5'- cGCuGGuCCGGGUGGGCGUGGUccgcuggguccgcugGUCCGg -3'
miRNA:   3'- cCG-CC-GGUCCACCUGCGUCA---------------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 159964 0.68 0.534596
Target:  5'- uGUGGUaggAGGUGGcGCGCAGgaGCCCGc -3'
miRNA:   3'- cCGCCGg--UCCACC-UGCGUCa-CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 169755 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 168823 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 112225 0.68 0.534596
Target:  5'- uGGCGGCCuGGGUGGuuGCAGUuGUUg-- -3'
miRNA:   3'- -CCGCCGG-UCCACCugCGUCA-CGGgca -5'
29079 5' -62.7 NC_006146.1 + 39154 0.68 0.534596
Target:  5'- uGGUGGCCGGGUccucccaGCAG-GUCCGUg -3'
miRNA:   3'- -CCGCCGGUCCAccug---CGUCaCGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 55171 0.68 0.534596
Target:  5'- gGGaGGCCAgGGUGGACGCugucaccuuugaGGUGCaucaCGa -3'
miRNA:   3'- -CCgCCGGU-CCACCUGCG------------UCACGg---GCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.