miRNA display CGI


Results 21 - 40 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 66708 0.71 0.348033
Target:  5'- uGCGGCCccguGG-GGGCGCAGacgGCCCu- -3'
miRNA:   3'- cCGCCGGu---CCaCCUGCGUCa--CGGGca -5'
29079 5' -62.7 NC_006146.1 + 78045 0.71 0.370631
Target:  5'- cGUGGCCgagaaaaggaugGGGUGGuuGUAGUGCUCGa -3'
miRNA:   3'- cCGCCGG------------UCCACCugCGUCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 149840 0.7 0.386244
Target:  5'- gGGCGGCCAGGgccucGGcgaaGCGCAGcgucucGCCCu- -3'
miRNA:   3'- -CCGCCGGUCCa----CC----UGCGUCa-----CGGGca -5'
29079 5' -62.7 NC_006146.1 + 54860 0.7 0.383087
Target:  5'- aGGCGGCCGGGaaaaaugggcugcGGGCGUAGcgggGUCCGc -3'
miRNA:   3'- -CCGCCGGUCCa------------CCUGCGUCa---CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 116844 0.7 0.386244
Target:  5'- cGGCGGCCAGGUGGGCccugaccaccGCcgacauGGccGCCCu- -3'
miRNA:   3'- -CCGCCGGUCCACCUG----------CG------UCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 54041 0.7 0.41874
Target:  5'- gGGCGGCCAugucGGcGGugGuCAGgGCCCa- -3'
miRNA:   3'- -CCGCCGGU----CCaCCugC-GUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 89946 0.7 0.410461
Target:  5'- aGGUGGCaCuGGaGGAaGCAGUGCCgGUg -3'
miRNA:   3'- -CCGCCG-GuCCaCCUgCGUCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 114335 0.7 0.435599
Target:  5'- cGGCcGCCccugacggAGGUGGACGgGGgccugGCCCGc -3'
miRNA:   3'- -CCGcCGG--------UCCACCUGCgUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 72198 0.7 0.435599
Target:  5'- cGGCGGCCGGaUGGGCGggagacCAGcgGCCCc- -3'
miRNA:   3'- -CCGCCGGUCcACCUGC------GUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 33228 0.69 0.461604
Target:  5'- gGGCaGCCGGGUGGcCGCcGgcggGUCCGc -3'
miRNA:   3'- -CCGcCGGUCCACCuGCGuCa---CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 116875 0.69 0.488405
Target:  5'- cGGCccGGCCAGGcGca-GCAGUGCCUGc -3'
miRNA:   3'- -CCG--CCGGUCCaCcugCGUCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 57378 0.69 0.460724
Target:  5'- cGGUGGCgCcGGUGGGCuggccccGCGaccGUGCCCGg -3'
miRNA:   3'- -CCGCCG-GuCCACCUG-------CGU---CACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33350 0.69 0.452844
Target:  5'- gGGCaGCCGGGUGGcCGCcGGUggGUCCGc -3'
miRNA:   3'- -CCGcCGGUCCACCuGCG-UCA--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 23480 0.69 0.492034
Target:  5'- cGUGGCCAGGUacGGGCugGUgggcucgcucugggaGGUGCCCGc -3'
miRNA:   3'- cCGCCGGUCCA--CCUG--CG---------------UCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 87240 0.69 0.469564
Target:  5'- gGGUGGCCaacccaaAGGUGGAggucuggccCGCAGaGCCCc- -3'
miRNA:   3'- -CCGCCGG-------UCCACCU---------GCGUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 92088 0.69 0.479388
Target:  5'- gGGCGGCCcggccuGGGgcugcugcugGGGgGCGG-GCCCGg -3'
miRNA:   3'- -CCGCCGG------UCCa---------CCUgCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 139063 0.69 0.469564
Target:  5'- uGGCGGCCAccauacgggcccuGGUGG-CGCGGggGgCUGUa -3'
miRNA:   3'- -CCGCCGGU-------------CCACCuGCGUCa-CgGGCA- -5'
29079 5' -62.7 NC_006146.1 + 14131 0.69 0.469564
Target:  5'- cGGCGGCCuacagccAGGUGuACGCGcUGgCCGUg -3'
miRNA:   3'- -CCGCCGG-------UCCACcUGCGUcACgGGCA- -5'
29079 5' -62.7 NC_006146.1 + 55171 0.68 0.534596
Target:  5'- gGGaGGCCAgGGUGGACGCugucaccuuugaGGUGCaucaCGa -3'
miRNA:   3'- -CCgCCGGU-CCACCUGCG------------UCACGg---GCa -5'
29079 5' -62.7 NC_006146.1 + 123939 0.68 0.506671
Target:  5'- cGGCGGCCGGGccGGcgaaauACGCGGgcacCCUGUg -3'
miRNA:   3'- -CCGCCGGUCCa-CC------UGCGUCac--GGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.