miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 166140 0.68 0.544027
Target:  5'- cGGUGGCaaAGGUGGACcaGGUGCUCa- -3'
miRNA:   3'- -CCGCCGg-UCCACCUGcgUCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 33958 0.68 0.538362
Target:  5'- cGCuGGuCCGGGUGGGCGUGGUccgcuggguccgcugGUCCGg -3'
miRNA:   3'- cCG-CC-GGUCCACCUGCGUCA---------------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 55171 0.68 0.534596
Target:  5'- gGGaGGCCAgGGUGGACGCugucaccuuugaGGUGCaucaCGa -3'
miRNA:   3'- -CCgCCGGU-CCACCUGCG------------UCACGg---GCa -5'
29079 5' -62.7 NC_006146.1 + 99706 0.68 0.515914
Target:  5'- cGGCGGgagugaggaucuUCAGGcuGACGCGGUGCuCCGa -3'
miRNA:   3'- -CCGCC------------GGUCCacCUGCGUCACG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 143258 0.68 0.4975
Target:  5'- aGGCuGGCCcGGU-GACGCuG-GCCCGg -3'
miRNA:   3'- -CCG-CCGGuCCAcCUGCGuCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 39154 0.68 0.534596
Target:  5'- uGGUGGCCGGGUccucccaGCAG-GUCCGUg -3'
miRNA:   3'- -CCGCCGGUCCAccug---CGUCaCGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 112225 0.68 0.534596
Target:  5'- uGGCGGCCuGGGUGGuuGCAGUuGUUg-- -3'
miRNA:   3'- -CCGCCGG-UCCACCugCGUCA-CGGgca -5'
29079 5' -62.7 NC_006146.1 + 167891 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 168823 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 17708 0.68 0.537419
Target:  5'- uGGCGGCCAagcgccuGGgGGACGUaaucuccguaucccaGugcGUGCCCGUc -3'
miRNA:   3'- -CCGCCGGU-------CCaCCUGCG---------------U---CACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 159964 0.68 0.534596
Target:  5'- uGUGGUaggAGGUGGcGCGCAGgaGCCCGc -3'
miRNA:   3'- cCGCCGg--UCCACC-UGCGUCa-CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 123939 0.68 0.506671
Target:  5'- cGGCGGCCGGGccGGcgaaauACGCGGgcacCCUGUg -3'
miRNA:   3'- -CCGCCGGUCCa-CC------UGCGUCac--GGGCA- -5'
29079 5' -62.7 NC_006146.1 + 122387 0.68 0.4975
Target:  5'- cGGCGGCCAGGa--ACGCggaGGUGCUgGa -3'
miRNA:   3'- -CCGCCGGUCCaccUGCG---UCACGGgCa -5'
29079 5' -62.7 NC_006146.1 + 39832 0.68 0.496587
Target:  5'- cGGCGGCCucggccgcacaguGGGccggcGGGgGCuguGUGCCCGg -3'
miRNA:   3'- -CCGCCGG-------------UCCa----CCUgCGu--CACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 123700 0.68 0.493853
Target:  5'- aGGCGGCCAGGggccuggcgcucgGGGCGgCGGcggGCUCu- -3'
miRNA:   3'- -CCGCCGGUCCa------------CCUGC-GUCa--CGGGca -5'
29079 5' -62.7 NC_006146.1 + 169755 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 51833 0.68 0.534596
Target:  5'- gGGCGGCguGGagggGGGCuCGGggccugGCCCGa -3'
miRNA:   3'- -CCGCCGguCCa---CCUGcGUCa-----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 115121 0.67 0.601556
Target:  5'- cGCuGGCCAGcGUGGugGCcucgcUGCCCc- -3'
miRNA:   3'- cCG-CCGGUC-CACCugCGuc---ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 68792 0.67 0.595749
Target:  5'- --aGGCUGGGUGGAUGgCAGUGggaacacacauggaaCCCGg -3'
miRNA:   3'- ccgCCGGUCCACCUGC-GUCAC---------------GGGCa -5'
29079 5' -62.7 NC_006146.1 + 76385 0.67 0.582236
Target:  5'- gGGCGcGCCGGGggagGGAC-CGGggGCgCCGa -3'
miRNA:   3'- -CCGC-CGGUCCa---CCUGcGUCa-CG-GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.