miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 108429 1.08 0.001036
Target:  5'- uGGCGGCCAGGUGGACGCAGUGCCCGUc -3'
miRNA:   3'- -CCGCCGGUCCACCUGCGUCACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 167761 0.75 0.198292
Target:  5'- aGgGGCCGGGUGGGCGCGcaugGCUCGa -3'
miRNA:   3'- cCgCCGGUCCACCUGCGUca--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 150688 0.74 0.222922
Target:  5'- aGUGGCCAGGgGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCaCCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 140130 0.74 0.238918
Target:  5'- gGGUGGCgGaGGUGGugGCgggGGUGCCCc- -3'
miRNA:   3'- -CCGCCGgU-CCACCugCG---UCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 40005 0.73 0.27997
Target:  5'- aGUGGCCGGuGUGGGCGUAGcaggggGCCUGc -3'
miRNA:   3'- cCGCCGGUC-CACCUGCGUCa-----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 147610 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 153765 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 156843 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 141454 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 144532 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 95009 0.72 0.299212
Target:  5'- cGGCGGUCAGGaugUGGACGgAGaggGuCCCGg -3'
miRNA:   3'- -CCGCCGGUCC---ACCUGCgUCa--C-GGGCa -5'
29079 5' -62.7 NC_006146.1 + 83767 0.72 0.299212
Target:  5'- gGGUGGCCuGGUGGGagguCGCAGUcgacCCCGa -3'
miRNA:   3'- -CCGCCGGuCCACCU----GCGUCAc---GGGCa -5'
29079 5' -62.7 NC_006146.1 + 122496 0.72 0.30585
Target:  5'- cGGCGGCgGGGUcgagagaauggaGGcCGCGGaGCCCGg -3'
miRNA:   3'- -CCGCCGgUCCA------------CCuGCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 66708 0.71 0.348033
Target:  5'- uGCGGCCccguGG-GGGCGCAGacgGCCCu- -3'
miRNA:   3'- cCGCCGGu---CCaCCUGCGUCa--CGGGca -5'
29079 5' -62.7 NC_006146.1 + 128190 0.71 0.348033
Target:  5'- aGGCGGcCCAGGgGGGCGCcGcgGCgCCGg -3'
miRNA:   3'- -CCGCC-GGUCCaCCUGCGuCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 44943 0.71 0.362988
Target:  5'- cGUGGCCAGG-GG-CGCGGggagGCCCc- -3'
miRNA:   3'- cCGCCGGUCCaCCuGCGUCa---CGGGca -5'
29079 5' -62.7 NC_006146.1 + 78045 0.71 0.370631
Target:  5'- cGUGGCCgagaaaaggaugGGGUGGuuGUAGUGCUCGa -3'
miRNA:   3'- cCGCCGG------------UCCACCugCGUCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 168175 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 142461 0.71 0.378383
Target:  5'- aGGCGGUguGGUGGGgcuccCGUggAGUGaCCCGg -3'
miRNA:   3'- -CCGCCGguCCACCU-----GCG--UCAC-GGGCa -5'
29079 5' -62.7 NC_006146.1 + 167243 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.