Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29079 | 5' | -62.7 | NC_006146.1 | + | 122387 | 0.68 | 0.4975 |
Target: 5'- cGGCGGCCAGGa--ACGCggaGGUGCUgGa -3' miRNA: 3'- -CCGCCGGUCCaccUGCG---UCACGGgCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 143258 | 0.68 | 0.4975 |
Target: 5'- aGGCuGGCCcGGU-GACGCuG-GCCCGg -3' miRNA: 3'- -CCG-CCGGuCCAcCUGCGuCaCGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 69852 | 0.68 | 0.4975 |
Target: 5'- cGUGGCCcugggAGGUcGGGCGUAGagGCCCa- -3' miRNA: 3'- cCGCCGG-----UCCA-CCUGCGUCa-CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 123939 | 0.68 | 0.506671 |
Target: 5'- cGGCGGCCGGGccGGcgaaauACGCGGgcacCCUGUg -3' miRNA: 3'- -CCGCCGGUCCa-CC------UGCGUCac--GGGCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 99706 | 0.68 | 0.515914 |
Target: 5'- cGGCGGgagugaggaucuUCAGGcuGACGCGGUGCuCCGa -3' miRNA: 3'- -CCGCC------------GGUCCacCUGCGUCACG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 169755 | 0.68 | 0.534596 |
Target: 5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3' miRNA: 3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 39154 | 0.68 | 0.534596 |
Target: 5'- uGGUGGCCGGGUccucccaGCAG-GUCCGUg -3' miRNA: 3'- -CCGCCGGUCCAccug---CGUCaCGGGCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 51833 | 0.68 | 0.534596 |
Target: 5'- gGGCGGCguGGagggGGGCuCGGggccugGCCCGa -3' miRNA: 3'- -CCGCCGguCCa---CCUGcGUCa-----CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 112225 | 0.68 | 0.534596 |
Target: 5'- uGGCGGCCuGGGUGGuuGCAGUuGUUg-- -3' miRNA: 3'- -CCGCCGG-UCCACCugCGUCA-CGGgca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 167891 | 0.68 | 0.534596 |
Target: 5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3' miRNA: 3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 168823 | 0.68 | 0.534596 |
Target: 5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3' miRNA: 3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 55171 | 0.68 | 0.534596 |
Target: 5'- gGGaGGCCAgGGUGGACGCugucaccuuugaGGUGCaucaCGa -3' miRNA: 3'- -CCgCCGGU-CCACCUGCG------------UCACGg---GCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 159964 | 0.68 | 0.534596 |
Target: 5'- uGUGGUaggAGGUGGcGCGCAGgaGCCCGc -3' miRNA: 3'- cCGCCGg--UCCACC-UGCGUCa-CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 17708 | 0.68 | 0.537419 |
Target: 5'- uGGCGGCCAagcgccuGGgGGACGUaaucuccguaucccaGugcGUGCCCGUc -3' miRNA: 3'- -CCGCCGGU-------CCaCCUGCG---------------U---CACGGGCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 33958 | 0.68 | 0.538362 |
Target: 5'- cGCuGGuCCGGGUGGGCGUGGUccgcuggguccgcugGUCCGg -3' miRNA: 3'- cCG-CC-GGUCCACCUGCGUCA---------------CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 166140 | 0.68 | 0.544027 |
Target: 5'- cGGUGGCaaAGGUGGACcaGGUGCUCa- -3' miRNA: 3'- -CCGCCGg-UCCACCUGcgUCACGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 140688 | 0.68 | 0.544027 |
Target: 5'- -cCGGCCAgcccGGcGGGCGCAGcgGCCCu- -3' miRNA: 3'- ccGCCGGU----CCaCCUGCGUCa-CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 33772 | 0.67 | 0.552561 |
Target: 5'- cGCuGGuCCGGGUGGGCGUGGUccgauggGUCCGc -3' miRNA: 3'- cCG-CC-GGUCCACCUGCGUCA-------CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 15976 | 0.67 | 0.563045 |
Target: 5'- gGGCGuucccugcGCCugcgaaGGGcGGACGCGGUcaGCCCGg -3' miRNA: 3'- -CCGC--------CGG------UCCaCCUGCGUCA--CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 34019 | 0.67 | 0.563045 |
Target: 5'- gGGgGGUCGGGgcaggcGGGCGUGGU-CCCGg -3' miRNA: 3'- -CCgCCGGUCCa-----CCUGCGUCAcGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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