miRNA display CGI


Results 101 - 120 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 113719 0.66 0.64039
Target:  5'- cGGCaGCCGGGacggugaagucgUGGAagGUAGcgGCCCGUc -3'
miRNA:   3'- -CCGcCGGUCC------------ACCUg-CGUCa-CGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 41054 0.66 0.64039
Target:  5'- cGGCGGCCcugggggccucgGGGUGGAgGgAG-GCCa-- -3'
miRNA:   3'- -CCGCCGG------------UCCACCUgCgUCaCGGgca -5'
29079 5' -62.7 NC_006146.1 + 73058 0.66 0.644275
Target:  5'- cGGCGGCCcccuccuccaggucGugguacuucaccagGGUGGACaGCAGcGUCCGg -3'
miRNA:   3'- -CCGCCGG--------------U--------------CCACCUG-CGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 68179 0.66 0.650101
Target:  5'- aGGCGcagcGUCAGGacgcGGGCGCAGcgGCuCCGg -3'
miRNA:   3'- -CCGC----CGGUCCa---CCUGCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 135139 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135232 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135325 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135418 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135511 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135604 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135882 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 165806 0.66 0.650101
Target:  5'- cGGcCGGCUAGGgGGGCGUcccugGCCgCGUg -3'
miRNA:   3'- -CC-GCCGGUCCaCCUGCGuca--CGG-GCA- -5'
29079 5' -62.7 NC_006146.1 + 53598 0.66 0.650101
Target:  5'- gGGauGCCGGGgaaaGGGCGCGGcaccgGgCCGUg -3'
miRNA:   3'- -CCgcCGGUCCa---CCUGCGUCa----CgGGCA- -5'
29079 5' -62.7 NC_006146.1 + 115697 0.66 0.650101
Target:  5'- aGGCGGCCgacAGGa-GACGCuc-GCCCGc -3'
miRNA:   3'- -CCGCCGG---UCCacCUGCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136161 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136347 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136254 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136068 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135975 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135789 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.