Results 21 - 40 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29079 | 5' | -62.7 | NC_006146.1 | + | 137555 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137090 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137462 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136440 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136811 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 135418 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136254 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 165806 | 0.66 | 0.650101 |
Target: 5'- cGGcCGGCUAGGgGGGCGUcccugGCCgCGUg -3' miRNA: 3'- -CC-GCCGGUCCaCCUGCGuca--CGG-GCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137276 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137369 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137183 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136626 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136904 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136997 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136533 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136347 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 135789 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 135975 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136068 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136161 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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