miRNA display CGI


Results 41 - 60 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 136347 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136254 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 73058 0.66 0.644275
Target:  5'- cGGCGGCCcccuccuccaggucGugguacuucaccagGGUGGACaGCAGcGUCCGg -3'
miRNA:   3'- -CCGCCGG--------------U--------------CCACCUG-CGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 106508 0.66 0.64039
Target:  5'- cGGgGGCCaagucagacAGGUGGGCGCAuccCCUGg -3'
miRNA:   3'- -CCgCCGG---------UCCACCUGCGUcacGGGCa -5'
29079 5' -62.7 NC_006146.1 + 41054 0.66 0.64039
Target:  5'- cGGCGGCCcugggggccucgGGGUGGAgGgAG-GCCa-- -3'
miRNA:   3'- -CCGCCGG------------UCCACCUgCgUCaCGGgca -5'
29079 5' -62.7 NC_006146.1 + 112165 0.66 0.64039
Target:  5'- uGGCGGCauguGUGGugGCauugguGGUGCUgGUg -3'
miRNA:   3'- -CCGCCGguc-CACCugCG------UCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 113719 0.66 0.64039
Target:  5'- cGGCaGCCGGGacggugaagucgUGGAagGUAGcgGCCCGUc -3'
miRNA:   3'- -CCGcCGGUCC------------ACCUg-CGUCa-CGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 33104 0.66 0.64039
Target:  5'- gGGCaGCCGGGUGGcCGCcggcgGGUucGCCgGg -3'
miRNA:   3'- -CCGcCGGUCCACCuGCG-----UCA--CGGgCa -5'
29079 5' -62.7 NC_006146.1 + 126813 0.66 0.630673
Target:  5'- cGCGGCCcgAGGUGGAaccacccCAGU-CCCGg -3'
miRNA:   3'- cCGCCGG--UCCACCUgc-----GUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 56802 0.66 0.630673
Target:  5'- cGGCGGCCGucuGGcGGGCGgGGcuucugGCCCc- -3'
miRNA:   3'- -CCGCCGGU---CCaCCUGCgUCa-----CGGGca -5'
29079 5' -62.7 NC_006146.1 + 46722 0.66 0.630673
Target:  5'- cGGCGGCUccgAGGcGGGCGgAG-GCCaCGc -3'
miRNA:   3'- -CCGCCGG---UCCaCCUGCgUCaCGG-GCa -5'
29079 5' -62.7 NC_006146.1 + 105195 0.66 0.630673
Target:  5'- cGgGGCCGGGgagccggGGGUGCccGGUGCCUGa -3'
miRNA:   3'- cCgCCGGUCCa------CCUGCG--UCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 43635 0.66 0.630673
Target:  5'- gGGCGGCgGGGcgUGGcCGCcuGGggagagggGCCCGg -3'
miRNA:   3'- -CCGCCGgUCC--ACCuGCG--UCa-------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 137718 0.66 0.630673
Target:  5'- cGGaGGCCAGGaccgagcgGcGGCGCggcGGUGCCCa- -3'
miRNA:   3'- -CCgCCGGUCCa-------C-CUGCG---UCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 44578 0.66 0.630673
Target:  5'- uGGCGgaaauGCCAGGaGGACG-AGUcGCCUGa -3'
miRNA:   3'- -CCGC-----CGGUCCaCCUGCgUCA-CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 86340 0.66 0.630673
Target:  5'- aGGCcaGCCAuuGGUGGAgGUGGaUGCCCa- -3'
miRNA:   3'- -CCGc-CGGU--CCACCUgCGUC-ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 47672 0.66 0.620958
Target:  5'- cGGCGGCCAGGgucucgUGGAUGgAGgacuuggGCgUGg -3'
miRNA:   3'- -CCGCCGGUCC------ACCUGCgUCa------CGgGCa -5'
29079 5' -62.7 NC_006146.1 + 123037 0.66 0.620958
Target:  5'- aGGCGGcCCAGGUccGGGCGCuGgaggagaggGUCCu- -3'
miRNA:   3'- -CCGCC-GGUCCA--CCUGCGuCa--------CGGGca -5'
29079 5' -62.7 NC_006146.1 + 158269 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 142878 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.