miRNA display CGI


Results 61 - 80 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 152112 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 155190 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 158269 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 142878 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 137985 0.66 0.61125
Target:  5'- cGGgGGCCcggcgGGGUGGGgGguGcGCCCc- -3'
miRNA:   3'- -CCgCCGG-----UCCACCUgCguCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 135697 0.67 0.601556
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGUc -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 112105 0.67 0.601556
Target:  5'- -uUGGCUcggGGGUGGAgGUGGUGCUgGUg -3'
miRNA:   3'- ccGCCGG---UCCACCUgCGUCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 115121 0.67 0.601556
Target:  5'- cGCuGGCCAGcGUGGugGCcucgcUGCCCc- -3'
miRNA:   3'- cCG-CCGGUC-CACCugCGuc---ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 139129 0.67 0.601556
Target:  5'- uGGCuccgauGGCgCAGGUGGGgGCAGUGUUg-- -3'
miRNA:   3'- -CCG------CCG-GUCCACCUgCGUCACGGgca -5'
29079 5' -62.7 NC_006146.1 + 114953 0.67 0.601556
Target:  5'- gGGCGGCgauggCGGGgGGcACGCAGcaGCCCa- -3'
miRNA:   3'- -CCGCCG-----GUCCaCC-UGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 68792 0.67 0.595749
Target:  5'- --aGGCUGGGUGGAUGgCAGUGggaacacacauggaaCCCGg -3'
miRNA:   3'- ccgCCGGUCCACCUGC-GUCAC---------------GGGCa -5'
29079 5' -62.7 NC_006146.1 + 170417 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 169486 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 168554 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 167622 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 47014 0.67 0.591883
Target:  5'- aGCGGCCcGGUcGGAcuCGCGGgcGCCCu- -3'
miRNA:   3'- cCGCCGGuCCA-CCU--GCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 46455 0.67 0.582236
Target:  5'- cGGCGGCgUAGGccGGAUGC-GUGCCg-- -3'
miRNA:   3'- -CCGCCG-GUCCa-CCUGCGuCACGGgca -5'
29079 5' -62.7 NC_006146.1 + 76385 0.67 0.582236
Target:  5'- gGGCGcGCCGGGggagGGAC-CGGggGCgCCGa -3'
miRNA:   3'- -CCGC-CGGUCCa---CCUGcGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 165309 0.67 0.582236
Target:  5'- uGGCGGCCgucGGGUGa--GCAGaGCCCc- -3'
miRNA:   3'- -CCGCCGG---UCCACcugCGUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 18649 0.67 0.582236
Target:  5'- aGGCaGCCAGGgau-CGCA-UGCCCGg -3'
miRNA:   3'- -CCGcCGGUCCaccuGCGUcACGGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.