miRNA display CGI


Results 81 - 100 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 18649 0.67 0.582236
Target:  5'- aGGCaGCCAGGgau-CGCA-UGCCCGg -3'
miRNA:   3'- -CCGcCGGUCCaccuGCGUcACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 109505 0.67 0.582236
Target:  5'- gGGCGGCCAcGUGGAagggauUGUAGaGCuCCGg -3'
miRNA:   3'- -CCGCCGGUcCACCU------GCGUCaCG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 33474 0.67 0.572621
Target:  5'- uGGgGGUCGGGaagggagGGGCGUGGUcCCCGg -3'
miRNA:   3'- -CCgCCGGUCCa------CCUGCGUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 68111 0.67 0.572621
Target:  5'- gGGCGGCCAGccGGucCGCGGUGagCGg -3'
miRNA:   3'- -CCGCCGGUCcaCCu-GCGUCACggGCa -5'
29079 5' -62.7 NC_006146.1 + 46645 0.67 0.572621
Target:  5'- cGGaugaGGCaaagaAGGUGGACGCuuccaaGGUgaaGCCCGg -3'
miRNA:   3'- -CCg---CCGg----UCCACCUGCG------UCA---CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 15976 0.67 0.563045
Target:  5'- gGGCGuucccugcGCCugcgaaGGGcGGACGCGGUcaGCCCGg -3'
miRNA:   3'- -CCGC--------CGG------UCCaCCUGCGUCA--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 34019 0.67 0.563045
Target:  5'- gGGgGGUCGGGgcaggcGGGCGUGGU-CCCGg -3'
miRNA:   3'- -CCgCCGGUCCa-----CCUGCGUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33772 0.67 0.552561
Target:  5'- cGCuGGuCCGGGUGGGCGUGGUccgauggGUCCGc -3'
miRNA:   3'- cCG-CC-GGUCCACCUGCGUCA-------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 166140 0.68 0.544027
Target:  5'- cGGUGGCaaAGGUGGACcaGGUGCUCa- -3'
miRNA:   3'- -CCGCCGg-UCCACCUGcgUCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 140688 0.68 0.544027
Target:  5'- -cCGGCCAgcccGGcGGGCGCAGcgGCCCu- -3'
miRNA:   3'- ccGCCGGU----CCaCCUGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 33958 0.68 0.538362
Target:  5'- cGCuGGuCCGGGUGGGCGUGGUccgcuggguccgcugGUCCGg -3'
miRNA:   3'- cCG-CC-GGUCCACCUGCGUCA---------------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 17708 0.68 0.537419
Target:  5'- uGGCGGCCAagcgccuGGgGGACGUaaucuccguaucccaGugcGUGCCCGUc -3'
miRNA:   3'- -CCGCCGGU-------CCaCCUGCG---------------U---CACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 159964 0.68 0.534596
Target:  5'- uGUGGUaggAGGUGGcGCGCAGgaGCCCGc -3'
miRNA:   3'- cCGCCGg--UCCACC-UGCGUCa-CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 169755 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 168823 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 112225 0.68 0.534596
Target:  5'- uGGCGGCCuGGGUGGuuGCAGUuGUUg-- -3'
miRNA:   3'- -CCGCCGG-UCCACCugCGUCA-CGGgca -5'
29079 5' -62.7 NC_006146.1 + 51833 0.68 0.534596
Target:  5'- gGGCGGCguGGagggGGGCuCGGggccugGCCCGa -3'
miRNA:   3'- -CCGCCGguCCa---CCUGcGUCa-----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 39154 0.68 0.534596
Target:  5'- uGGUGGCCGGGUccucccaGCAG-GUCCGUg -3'
miRNA:   3'- -CCGCCGGUCCAccug---CGUCaCGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 55171 0.68 0.534596
Target:  5'- gGGaGGCCAgGGUGGACGCugucaccuuugaGGUGCaucaCGa -3'
miRNA:   3'- -CCgCCGGU-CCACCUGCG------------UCACGg---GCa -5'
29079 5' -62.7 NC_006146.1 + 167891 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.