miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 14131 0.69 0.469564
Target:  5'- cGGCGGCCuacagccAGGUGuACGCGcUGgCCGUg -3'
miRNA:   3'- -CCGCCGG-------UCCACcUGCGUcACgGGCA- -5'
29079 5' -62.7 NC_006146.1 + 15942 0.66 0.669476
Target:  5'- gGGCgaGGCUGGGUGGcuGgGCAG-GCCgGUc -3'
miRNA:   3'- -CCG--CCGGUCCACC--UgCGUCaCGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 15976 0.67 0.563045
Target:  5'- gGGCGuucccugcGCCugcgaaGGGcGGACGCGGUcaGCCCGg -3'
miRNA:   3'- -CCGC--------CGG------UCCaCCUGCGUCA--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 17708 0.68 0.537419
Target:  5'- uGGCGGCCAagcgccuGGgGGACGUaaucuccguaucccaGugcGUGCCCGUc -3'
miRNA:   3'- -CCGCCGGU-------CCaCCUGCG---------------U---CACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 18649 0.67 0.582236
Target:  5'- aGGCaGCCAGGgau-CGCA-UGCCCGg -3'
miRNA:   3'- -CCGcCGGUCCaccuGCGUcACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 23480 0.69 0.492034
Target:  5'- cGUGGCCAGGUacGGGCugGUgggcucgcucugggaGGUGCCCGc -3'
miRNA:   3'- cCGCCGGUCCA--CCUG--CG---------------UCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33104 0.66 0.64039
Target:  5'- gGGCaGCCGGGUGGcCGCcggcgGGUucGCCgGg -3'
miRNA:   3'- -CCGcCGGUCCACCuGCG-----UCA--CGGgCa -5'
29079 5' -62.7 NC_006146.1 + 33228 0.69 0.461604
Target:  5'- gGGCaGCCGGGUGGcCGCcGgcggGUCCGc -3'
miRNA:   3'- -CCGcCGGUCCACCuGCGuCa---CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33350 0.69 0.452844
Target:  5'- gGGCaGCCGGGUGGcCGCcGGUggGUCCGc -3'
miRNA:   3'- -CCGcCGGUCCACCuGCG-UCA--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33474 0.67 0.572621
Target:  5'- uGGgGGUCGGGaagggagGGGCGUGGUcCCCGg -3'
miRNA:   3'- -CCgCCGGUCCa------CCUGCGUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33772 0.67 0.552561
Target:  5'- cGCuGGuCCGGGUGGGCGUGGUccgauggGUCCGc -3'
miRNA:   3'- cCG-CC-GGUCCACCUGCGUCA-------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33958 0.68 0.538362
Target:  5'- cGCuGGuCCGGGUGGGCGUGGUccgcuggguccgcugGUCCGg -3'
miRNA:   3'- cCG-CC-GGUCCACCUGCGUCA---------------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 34019 0.67 0.563045
Target:  5'- gGGgGGUCGGGgcaggcGGGCGUGGU-CCCGg -3'
miRNA:   3'- -CCgCCGGUCCa-----CCUGCGUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 39154 0.68 0.534596
Target:  5'- uGGUGGCCGGGUccucccaGCAG-GUCCGUg -3'
miRNA:   3'- -CCGCCGGUCCAccug---CGUCaCGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 39832 0.68 0.496587
Target:  5'- cGGCGGCCucggccgcacaguGGGccggcGGGgGCuguGUGCCCGg -3'
miRNA:   3'- -CCGCCGG-------------UCCa----CCUgCGu--CACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 40005 0.73 0.27997
Target:  5'- aGUGGCCGGuGUGGGCGUAGcaggggGCCUGc -3'
miRNA:   3'- cCGCCGGUC-CACCUGCGUCa-----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 41054 0.66 0.64039
Target:  5'- cGGCGGCCcugggggccucgGGGUGGAgGgAG-GCCa-- -3'
miRNA:   3'- -CCGCCGG------------UCCACCUgCgUCaCGGgca -5'
29079 5' -62.7 NC_006146.1 + 42287 0.66 0.659799
Target:  5'- uGGUGGCgGGGaGGAggagcgggagcCGgAGUGCCCu- -3'
miRNA:   3'- -CCGCCGgUCCaCCU-----------GCgUCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 43635 0.66 0.630673
Target:  5'- gGGCGGCgGGGcgUGGcCGCcuGGggagagggGCCCGg -3'
miRNA:   3'- -CCGCCGgUCC--ACCuGCG--UCa-------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 44578 0.66 0.630673
Target:  5'- uGGCGgaaauGCCAGGaGGACG-AGUcGCCUGa -3'
miRNA:   3'- -CCGC-----CGGUCCaCCUGCgUCA-CGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.