miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 69852 0.68 0.4975
Target:  5'- cGUGGCCcugggAGGUcGGGCGUAGagGCCCa- -3'
miRNA:   3'- cCGCCGG-----UCCA-CCUGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 72198 0.7 0.435599
Target:  5'- cGGCGGCCGGaUGGGCGggagacCAGcgGCCCc- -3'
miRNA:   3'- -CCGCCGGUCcACCUGC------GUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 73058 0.66 0.644275
Target:  5'- cGGCGGCCcccuccuccaggucGugguacuucaccagGGUGGACaGCAGcGUCCGg -3'
miRNA:   3'- -CCGCCGG--------------U--------------CCACCUG-CGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 76385 0.67 0.582236
Target:  5'- gGGCGcGCCGGGggagGGAC-CGGggGCgCCGa -3'
miRNA:   3'- -CCGC-CGGUCCa---CCUGcGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 78045 0.71 0.370631
Target:  5'- cGUGGCCgagaaaaggaugGGGUGGuuGUAGUGCUCGa -3'
miRNA:   3'- cCGCCGG------------UCCACCugCGUCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 83767 0.72 0.299212
Target:  5'- gGGUGGCCuGGUGGGagguCGCAGUcgacCCCGa -3'
miRNA:   3'- -CCGCCGGuCCACCU----GCGUCAc---GGGCa -5'
29079 5' -62.7 NC_006146.1 + 86340 0.66 0.630673
Target:  5'- aGGCcaGCCAuuGGUGGAgGUGGaUGCCCa- -3'
miRNA:   3'- -CCGc-CGGU--CCACCUgCGUC-ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 87240 0.69 0.469564
Target:  5'- gGGUGGCCaacccaaAGGUGGAggucuggccCGCAGaGCCCc- -3'
miRNA:   3'- -CCGCCGG-------UCCACCU---------GCGUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 89946 0.7 0.410461
Target:  5'- aGGUGGCaCuGGaGGAaGCAGUGCCgGUg -3'
miRNA:   3'- -CCGCCG-GuCCaCCUgCGUCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 92088 0.69 0.479388
Target:  5'- gGGCGGCCcggccuGGGgcugcugcugGGGgGCGG-GCCCGg -3'
miRNA:   3'- -CCGCCGG------UCCa---------CCUgCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 95009 0.72 0.299212
Target:  5'- cGGCGGUCAGGaugUGGACGgAGaggGuCCCGg -3'
miRNA:   3'- -CCGCCGGUCC---ACCUGCgUCa--C-GGGCa -5'
29079 5' -62.7 NC_006146.1 + 99706 0.68 0.515914
Target:  5'- cGGCGGgagugaggaucuUCAGGcuGACGCGGUGCuCCGa -3'
miRNA:   3'- -CCGCC------------GGUCCacCUGCGUCACG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 105195 0.66 0.630673
Target:  5'- cGgGGCCGGGgagccggGGGUGCccGGUGCCUGa -3'
miRNA:   3'- cCgCCGGUCCa------CCUGCG--UCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 106508 0.66 0.64039
Target:  5'- cGGgGGCCaagucagacAGGUGGGCGCAuccCCUGg -3'
miRNA:   3'- -CCgCCGG---------UCCACCUGCGUcacGGGCa -5'
29079 5' -62.7 NC_006146.1 + 108429 1.08 0.001036
Target:  5'- uGGCGGCCAGGUGGACGCAGUGCCCGUc -3'
miRNA:   3'- -CCGCCGGUCCACCUGCGUCACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 109505 0.67 0.582236
Target:  5'- gGGCGGCCAcGUGGAagggauUGUAGaGCuCCGg -3'
miRNA:   3'- -CCGCCGGUcCACCU------GCGUCaCG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 112105 0.67 0.601556
Target:  5'- -uUGGCUcggGGGUGGAgGUGGUGCUgGUg -3'
miRNA:   3'- ccGCCGG---UCCACCUgCGUCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 112165 0.66 0.64039
Target:  5'- uGGCGGCauguGUGGugGCauugguGGUGCUgGUg -3'
miRNA:   3'- -CCGCCGguc-CACCugCG------UCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 112225 0.68 0.534596
Target:  5'- uGGCGGCCuGGGUGGuuGCAGUuGUUg-- -3'
miRNA:   3'- -CCGCCGG-UCCACCugCGUCA-CGGgca -5'
29079 5' -62.7 NC_006146.1 + 113719 0.66 0.64039
Target:  5'- cGGCaGCCGGGacggugaagucgUGGAagGUAGcgGCCCGUc -3'
miRNA:   3'- -CCGcCGGUCC------------ACCUg-CGUCa-CGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.