miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 114335 0.7 0.435599
Target:  5'- cGGCcGCCccugacggAGGUGGACGgGGgccugGCCCGc -3'
miRNA:   3'- -CCGcCGG--------UCCACCUGCgUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 114953 0.67 0.601556
Target:  5'- gGGCGGCgauggCGGGgGGcACGCAGcaGCCCa- -3'
miRNA:   3'- -CCGCCG-----GUCCaCC-UGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 115121 0.67 0.601556
Target:  5'- cGCuGGCCAGcGUGGugGCcucgcUGCCCc- -3'
miRNA:   3'- cCG-CCGGUC-CACCugCGuc---ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 115697 0.66 0.650101
Target:  5'- aGGCGGCCgacAGGa-GACGCuc-GCCCGc -3'
miRNA:   3'- -CCGCCGG---UCCacCUGCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 116844 0.7 0.386244
Target:  5'- cGGCGGCCAGGUGGGCccugaccaccGCcgacauGGccGCCCu- -3'
miRNA:   3'- -CCGCCGGUCCACCUG----------CG------UCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 116875 0.69 0.488405
Target:  5'- cGGCccGGCCAGGcGca-GCAGUGCCUGc -3'
miRNA:   3'- -CCG--CCGGUCCaCcugCGUCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 122387 0.68 0.4975
Target:  5'- cGGCGGCCAGGa--ACGCggaGGUGCUgGa -3'
miRNA:   3'- -CCGCCGGUCCaccUGCG---UCACGGgCa -5'
29079 5' -62.7 NC_006146.1 + 122496 0.72 0.30585
Target:  5'- cGGCGGCgGGGUcgagagaauggaGGcCGCGGaGCCCGg -3'
miRNA:   3'- -CCGCCGgUCCA------------CCuGCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 123037 0.66 0.620958
Target:  5'- aGGCGGcCCAGGUccGGGCGCuGgaggagaggGUCCu- -3'
miRNA:   3'- -CCGCC-GGUCCA--CCUGCGuCa--------CGGGca -5'
29079 5' -62.7 NC_006146.1 + 123700 0.68 0.493853
Target:  5'- aGGCGGCCAGGggccuggcgcucgGGGCGgCGGcggGCUCu- -3'
miRNA:   3'- -CCGCCGGUCCa------------CCUGC-GUCa--CGGGca -5'
29079 5' -62.7 NC_006146.1 + 123939 0.68 0.506671
Target:  5'- cGGCGGCCGGGccGGcgaaauACGCGGgcacCCUGUg -3'
miRNA:   3'- -CCGCCGGUCCa-CC------UGCGUCac--GGGCA- -5'
29079 5' -62.7 NC_006146.1 + 126813 0.66 0.630673
Target:  5'- cGCGGCCcgAGGUGGAaccacccCAGU-CCCGg -3'
miRNA:   3'- cCGCCGG--UCCACCUgc-----GUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 128190 0.71 0.348033
Target:  5'- aGGCGGcCCAGGgGGGCGCcGcgGCgCCGg -3'
miRNA:   3'- -CCGCC-GGUCCaCCUGCGuCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 135139 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135232 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135325 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135418 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135511 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135604 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135697 0.67 0.601556
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGUc -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.