miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 170417 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 170039 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 169755 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 169486 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 169107 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 168823 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 168554 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 168175 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 167891 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 167761 0.75 0.198292
Target:  5'- aGgGGCCGGGUGGGCGCGcaugGCUCGa -3'
miRNA:   3'- cCgCCGGUCCACCUGCGUca--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 167622 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 167243 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 166140 0.68 0.544027
Target:  5'- cGGUGGCaaAGGUGGACcaGGUGCUCa- -3'
miRNA:   3'- -CCGCCGg-UCCACCUGcgUCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 165806 0.66 0.650101
Target:  5'- cGGcCGGCUAGGgGGGCGUcccugGCCgCGUg -3'
miRNA:   3'- -CC-GCCGGUCCaCCUGCGuca--CGG-GCA- -5'
29079 5' -62.7 NC_006146.1 + 165309 0.67 0.582236
Target:  5'- uGGCGGCCgucGGGUGa--GCAGaGCCCc- -3'
miRNA:   3'- -CCGCCGG---UCCACcugCGUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 161754 0.66 0.656891
Target:  5'- uGGCGGCUgAGGUccgagggggcgccuGGGCGgGG-GCCUGa -3'
miRNA:   3'- -CCGCCGG-UCCA--------------CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 159964 0.68 0.534596
Target:  5'- uGUGGUaggAGGUGGcGCGCAGgaGCCCGc -3'
miRNA:   3'- cCGCCGg--UCCACC-UGCGUCa-CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 158269 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 157112 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 156843 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.