miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 156205 0.66 0.659799
Target:  5'- gGGaCcGCCAGGUGGuugcaggagACGCGG-GCCCc- -3'
miRNA:   3'- -CC-GcCGGUCCACC---------UGCGUCaCGGGca -5'
29079 5' -62.7 NC_006146.1 + 155190 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 154034 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 153765 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 152112 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 150956 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 150688 0.74 0.222922
Target:  5'- aGUGGCCAGGgGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCaCCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 149840 0.7 0.386244
Target:  5'- gGGCGGCCAGGgccucGGcgaaGCGCAGcgucucGCCCu- -3'
miRNA:   3'- -CCGCCGGUCCa----CC----UGCGUCa-----CGGGca -5'
29079 5' -62.7 NC_006146.1 + 149034 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 147878 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 147610 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 145956 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 144800 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 144532 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 143258 0.68 0.4975
Target:  5'- aGGCuGGCCcGGU-GACGCuG-GCCCGg -3'
miRNA:   3'- -CCG-CCGGuCCAcCUGCGuCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 142878 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 142461 0.71 0.378383
Target:  5'- aGGCGGUguGGUGGGgcuccCGUggAGUGaCCCGg -3'
miRNA:   3'- -CCGCCGguCCACCU-----GCG--UCAC-GGGCa -5'
29079 5' -62.7 NC_006146.1 + 141722 0.66 0.669476
Target:  5'- gGGgGGCCGGGgagGGAgGCGGggaggacagGCCa-- -3'
miRNA:   3'- -CCgCCGGUCCa--CCUgCGUCa--------CGGgca -5'
29079 5' -62.7 NC_006146.1 + 141454 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 140688 0.68 0.544027
Target:  5'- -cCGGCCAgcccGGcGGGCGCAGcgGCCCu- -3'
miRNA:   3'- ccGCCGGU----CCaCCUGCGUCa-CGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.