Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29079 | 5' | -62.7 | NC_006146.1 | + | 140130 | 0.74 | 0.238918 |
Target: 5'- gGGUGGCgGaGGUGGugGCgggGGUGCCCc- -3' miRNA: 3'- -CCGCCGgU-CCACCugCG---UCACGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 139129 | 0.67 | 0.601556 |
Target: 5'- uGGCuccgauGGCgCAGGUGGGgGCAGUGUUg-- -3' miRNA: 3'- -CCG------CCG-GUCCACCUgCGUCACGGgca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 139063 | 0.69 | 0.469564 |
Target: 5'- uGGCGGCCAccauacgggcccuGGUGG-CGCGGggGgCUGUa -3' miRNA: 3'- -CCGCCGGU-------------CCACCuGCGUCa-CgGGCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137985 | 0.66 | 0.61125 |
Target: 5'- cGGgGGCCcggcgGGGUGGGgGguGcGCCCc- -3' miRNA: 3'- -CCgCCGG-----UCCACCUgCguCaCGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137718 | 0.66 | 0.630673 |
Target: 5'- cGGaGGCCAGGaccgagcgGcGGCGCggcGGUGCCCa- -3' miRNA: 3'- -CCgCCGGUCCa-------C-CUGCG---UCACGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137555 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137462 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137369 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137276 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137225 | 0.66 | 0.669476 |
Target: 5'- aGGaaGCCGGGUGGGgGCcuggGGU-CCCGg -3' miRNA: 3'- -CCgcCGGUCCACCUgCG----UCAcGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137183 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 137090 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136997 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136904 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136811 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136626 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136533 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136440 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136347 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 136254 | 0.66 | 0.650101 |
Target: 5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3' miRNA: 3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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