Results 81 - 100 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29079 | 5' | -62.7 | NC_006146.1 | + | 116844 | 0.7 | 0.386244 |
Target: 5'- cGGCGGCCAGGUGGGCccugaccaccGCcgacauGGccGCCCu- -3' miRNA: 3'- -CCGCCGGUCCACCUG----------CG------UCa-CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 115697 | 0.66 | 0.650101 |
Target: 5'- aGGCGGCCgacAGGa-GACGCuc-GCCCGc -3' miRNA: 3'- -CCGCCGG---UCCacCUGCGucaCGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 115121 | 0.67 | 0.601556 |
Target: 5'- cGCuGGCCAGcGUGGugGCcucgcUGCCCc- -3' miRNA: 3'- cCG-CCGGUC-CACCugCGuc---ACGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 114953 | 0.67 | 0.601556 |
Target: 5'- gGGCGGCgauggCGGGgGGcACGCAGcaGCCCa- -3' miRNA: 3'- -CCGCCG-----GUCCaCC-UGCGUCa-CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 114335 | 0.7 | 0.435599 |
Target: 5'- cGGCcGCCccugacggAGGUGGACGgGGgccugGCCCGc -3' miRNA: 3'- -CCGcCGG--------UCCACCUGCgUCa----CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 113719 | 0.66 | 0.64039 |
Target: 5'- cGGCaGCCGGGacggugaagucgUGGAagGUAGcgGCCCGUc -3' miRNA: 3'- -CCGcCGGUCC------------ACCUg-CGUCa-CGGGCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 112225 | 0.68 | 0.534596 |
Target: 5'- uGGCGGCCuGGGUGGuuGCAGUuGUUg-- -3' miRNA: 3'- -CCGCCGG-UCCACCugCGUCA-CGGgca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 112165 | 0.66 | 0.64039 |
Target: 5'- uGGCGGCauguGUGGugGCauugguGGUGCUgGUg -3' miRNA: 3'- -CCGCCGguc-CACCugCG------UCACGGgCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 112105 | 0.67 | 0.601556 |
Target: 5'- -uUGGCUcggGGGUGGAgGUGGUGCUgGUg -3' miRNA: 3'- ccGCCGG---UCCACCUgCGUCACGGgCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 109505 | 0.67 | 0.582236 |
Target: 5'- gGGCGGCCAcGUGGAagggauUGUAGaGCuCCGg -3' miRNA: 3'- -CCGCCGGUcCACCU------GCGUCaCG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 108429 | 1.08 | 0.001036 |
Target: 5'- uGGCGGCCAGGUGGACGCAGUGCCCGUc -3' miRNA: 3'- -CCGCCGGUCCACCUGCGUCACGGGCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 106508 | 0.66 | 0.64039 |
Target: 5'- cGGgGGCCaagucagacAGGUGGGCGCAuccCCUGg -3' miRNA: 3'- -CCgCCGG---------UCCACCUGCGUcacGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 105195 | 0.66 | 0.630673 |
Target: 5'- cGgGGCCGGGgagccggGGGUGCccGGUGCCUGa -3' miRNA: 3'- cCgCCGGUCCa------CCUGCG--UCACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 99706 | 0.68 | 0.515914 |
Target: 5'- cGGCGGgagugaggaucuUCAGGcuGACGCGGUGCuCCGa -3' miRNA: 3'- -CCGCC------------GGUCCacCUGCGUCACG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 95009 | 0.72 | 0.299212 |
Target: 5'- cGGCGGUCAGGaugUGGACGgAGaggGuCCCGg -3' miRNA: 3'- -CCGCCGGUCC---ACCUGCgUCa--C-GGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 92088 | 0.69 | 0.479388 |
Target: 5'- gGGCGGCCcggccuGGGgcugcugcugGGGgGCGG-GCCCGg -3' miRNA: 3'- -CCGCCGG------UCCa---------CCUgCGUCaCGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 89946 | 0.7 | 0.410461 |
Target: 5'- aGGUGGCaCuGGaGGAaGCAGUGCCgGUg -3' miRNA: 3'- -CCGCCG-GuCCaCCUgCGUCACGGgCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 87240 | 0.69 | 0.469564 |
Target: 5'- gGGUGGCCaacccaaAGGUGGAggucuggccCGCAGaGCCCc- -3' miRNA: 3'- -CCGCCGG-------UCCACCU---------GCGUCaCGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 86340 | 0.66 | 0.630673 |
Target: 5'- aGGCcaGCCAuuGGUGGAgGUGGaUGCCCa- -3' miRNA: 3'- -CCGc-CGGU--CCACCUgCGUC-ACGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 83767 | 0.72 | 0.299212 |
Target: 5'- gGGUGGCCuGGUGGGagguCGCAGUcgacCCCGa -3' miRNA: 3'- -CCGCCGGuCCACCU----GCGUCAc---GGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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