miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 108429 1.08 0.001036
Target:  5'- uGGCGGCCAGGUGGACGCAGUGCCCGUc -3'
miRNA:   3'- -CCGCCGGUCCACCUGCGUCACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 69852 0.68 0.4975
Target:  5'- cGUGGCCcugggAGGUcGGGCGUAGagGCCCa- -3'
miRNA:   3'- cCGCCGG-----UCCA-CCUGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 99706 0.68 0.515914
Target:  5'- cGGCGGgagugaggaucuUCAGGcuGACGCGGUGCuCCGa -3'
miRNA:   3'- -CCGCC------------GGUCCacCUGCGUCACG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 53342 0.66 0.669476
Target:  5'- cGGCGGCCGcGGgGcGGCGUgaGGUcuuggcugGCCCGg -3'
miRNA:   3'- -CCGCCGGU-CCaC-CUGCG--UCA--------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 142461 0.71 0.378383
Target:  5'- aGGCGGUguGGUGGGgcuccCGUggAGUGaCCCGg -3'
miRNA:   3'- -CCGCCGguCCACCU-----GCG--UCAC-GGGCa -5'
29079 5' -62.7 NC_006146.1 + 167243 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 169107 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 170039 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 89946 0.7 0.410461
Target:  5'- aGGUGGCaCuGGaGGAaGCAGUGCCgGUg -3'
miRNA:   3'- -CCGCCG-GuCCaCCUgCGUCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 116875 0.69 0.488405
Target:  5'- cGGCccGGCCAGGcGca-GCAGUGCCUGc -3'
miRNA:   3'- -CCG--CCGGUCCaCcugCGUCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33350 0.69 0.452844
Target:  5'- gGGCaGCCGGGUGGcCGCcGGUggGUCCGc -3'
miRNA:   3'- -CCGcCGGUCCACCuGCG-UCA--CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 149840 0.7 0.386244
Target:  5'- gGGCGGCCAGGgccucGGcgaaGCGCAGcgucucGCCCu- -3'
miRNA:   3'- -CCGCCGGUCCa----CC----UGCGUCa-----CGGGca -5'
29079 5' -62.7 NC_006146.1 + 95009 0.72 0.299212
Target:  5'- cGGCGGUCAGGaugUGGACGgAGaggGuCCCGg -3'
miRNA:   3'- -CCGCCGGUCC---ACCUGCgUCa--C-GGGCa -5'
29079 5' -62.7 NC_006146.1 + 57378 0.69 0.460724
Target:  5'- cGGUGGCgCcGGUGGGCuggccccGCGaccGUGCCCGg -3'
miRNA:   3'- -CCGCCG-GuCCACCUG-------CGU---CACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 128190 0.71 0.348033
Target:  5'- aGGCGGcCCAGGgGGGCGCcGcgGCgCCGg -3'
miRNA:   3'- -CCGCC-GGUCCaCCUGCGuCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 54860 0.7 0.383087
Target:  5'- aGGCGGCCGGGaaaaaugggcugcGGGCGUAGcgggGUCCGc -3'
miRNA:   3'- -CCGCCGGUCCa------------CCUGCGUCa---CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33228 0.69 0.461604
Target:  5'- gGGCaGCCGGGUGGcCGCcGgcggGUCCGc -3'
miRNA:   3'- -CCGcCGGUCCACCuGCGuCa---CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 143258 0.68 0.4975
Target:  5'- aGGCuGGCCcGGU-GACGCuG-GCCCGg -3'
miRNA:   3'- -CCG-CCGGuCCAcCUGCGuCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 44943 0.71 0.362988
Target:  5'- cGUGGCCAGG-GG-CGCGGggagGCCCc- -3'
miRNA:   3'- cCGCCGGUCCaCCuGCGUCa---CGGGca -5'
29079 5' -62.7 NC_006146.1 + 168175 0.71 0.378383
Target:  5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3'
miRNA:   3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.