Results 21 - 40 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29079 | 5' | -62.7 | NC_006146.1 | + | 112225 | 0.68 | 0.534596 |
Target: 5'- uGGCGGCCuGGGUGGuuGCAGUuGUUg-- -3' miRNA: 3'- -CCGCCGG-UCCACCugCGUCA-CGGgca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 99706 | 0.68 | 0.515914 |
Target: 5'- cGGCGGgagugaggaucuUCAGGcuGACGCGGUGCuCCGa -3' miRNA: 3'- -CCGCC------------GGUCCacCUGCGUCACG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 149840 | 0.7 | 0.386244 |
Target: 5'- gGGCGGCCAGGgccucGGcgaaGCGCAGcgucucGCCCu- -3' miRNA: 3'- -CCGCCGGUCCa----CC----UGCGUCa-----CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 44943 | 0.71 | 0.362988 |
Target: 5'- cGUGGCCAGG-GG-CGCGGggagGCCCc- -3' miRNA: 3'- cCGCCGGUCCaCCuGCGUCa---CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 47014 | 0.67 | 0.591883 |
Target: 5'- aGCGGCCcGGUcGGAcuCGCGGgcGCCCu- -3' miRNA: 3'- cCGCCGGuCCA-CCU--GCGUCa-CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 33958 | 0.68 | 0.538362 |
Target: 5'- cGCuGGuCCGGGUGGGCGUGGUccgcuggguccgcugGUCCGg -3' miRNA: 3'- cCG-CC-GGUCCACCUGCGUCA---------------CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 69852 | 0.68 | 0.4975 |
Target: 5'- cGUGGCCcugggAGGUcGGGCGUAGagGCCCa- -3' miRNA: 3'- cCGCCGG-----UCCA-CCUGCGUCa-CGGGca -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 128190 | 0.71 | 0.348033 |
Target: 5'- aGGCGGcCCAGGgGGGCGCcGcgGCgCCGg -3' miRNA: 3'- -CCGCC-GGUCCaCCUGCGuCa-CG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 159964 | 0.68 | 0.534596 |
Target: 5'- uGUGGUaggAGGUGGcGCGCAGgaGCCCGc -3' miRNA: 3'- cCGCCGg--UCCACC-UGCGUCa-CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 95009 | 0.72 | 0.299212 |
Target: 5'- cGGCGGUCAGGaugUGGACGgAGaggGuCCCGg -3' miRNA: 3'- -CCGCCGGUCC---ACCUGCgUCa--C-GGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 143258 | 0.68 | 0.4975 |
Target: 5'- aGGCuGGCCcGGU-GACGCuG-GCCCGg -3' miRNA: 3'- -CCG-CCGGuCCAcCUGCGuCaCGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 167891 | 0.68 | 0.534596 |
Target: 5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3' miRNA: 3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 57378 | 0.69 | 0.460724 |
Target: 5'- cGGUGGCgCcGGUGGGCuggccccGCGaccGUGCCCGg -3' miRNA: 3'- -CCGCCG-GuCCACCUG-------CGU---CACGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 89946 | 0.7 | 0.410461 |
Target: 5'- aGGUGGCaCuGGaGGAaGCAGUGCCgGUg -3' miRNA: 3'- -CCGCCG-GuCCaCCUgCGUCACGGgCA- -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 169107 | 0.71 | 0.378383 |
Target: 5'- cGCGGCCAGucccUGGAUGuCGGggaggGCCCGg -3' miRNA: 3'- cCGCCGGUCc---ACCUGC-GUCa----CGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 142461 | 0.71 | 0.378383 |
Target: 5'- aGGCGGUguGGUGGGgcuccCGUggAGUGaCCCGg -3' miRNA: 3'- -CCGCCGguCCACCU-----GCG--UCAC-GGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 170417 | 0.67 | 0.591883 |
Target: 5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3' miRNA: 3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 167622 | 0.67 | 0.591883 |
Target: 5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3' miRNA: 3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 68111 | 0.67 | 0.572621 |
Target: 5'- gGGCGGCCAGccGGucCGCGGUGagCGg -3' miRNA: 3'- -CCGCCGGUCcaCCu-GCGUCACggGCa -5' |
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29079 | 5' | -62.7 | NC_006146.1 | + | 33772 | 0.67 | 0.552561 |
Target: 5'- cGCuGGuCCGGGUGGGCGUGGUccgauggGUCCGc -3' miRNA: 3'- cCG-CC-GGUCCACCUGCGUCA-------CGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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