miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 135697 0.67 0.601556
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGUc -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCA- -5'
29079 5' -62.7 NC_006146.1 + 51833 0.68 0.534596
Target:  5'- gGGCGGCguGGagggGGGCuCGGggccugGCCCGa -3'
miRNA:   3'- -CCGCCGguCCa---CCUGcGUCa-----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 168823 0.68 0.534596
Target:  5'- gGGCGGCCcGG-GGAcccuCGCGGggGCaCCGg -3'
miRNA:   3'- -CCGCCGGuCCaCCU----GCGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 159964 0.68 0.534596
Target:  5'- uGUGGUaggAGGUGGcGCGCAGgaGCCCGc -3'
miRNA:   3'- cCGCCGg--UCCACC-UGCGUCa-CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33958 0.68 0.538362
Target:  5'- cGCuGGuCCGGGUGGGCGUGGUccgcuggguccgcugGUCCGg -3'
miRNA:   3'- cCG-CC-GGUCCACCUGCGUCA---------------CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 33474 0.67 0.572621
Target:  5'- uGGgGGUCGGGaagggagGGGCGUGGUcCCCGg -3'
miRNA:   3'- -CCgCCGGUCCa------CCUGCGUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 68111 0.67 0.572621
Target:  5'- gGGCGGCCAGccGGucCGCGGUGagCGg -3'
miRNA:   3'- -CCGCCGGUCcaCCu-GCGUCACggGCa -5'
29079 5' -62.7 NC_006146.1 + 109505 0.67 0.582236
Target:  5'- gGGCGGCCAcGUGGAagggauUGUAGaGCuCCGg -3'
miRNA:   3'- -CCGCCGGUcCACCU------GCGUCaCG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 47014 0.67 0.591883
Target:  5'- aGCGGCCcGGUcGGAcuCGCGGgcGCCCu- -3'
miRNA:   3'- cCGCCGGuCCA-CCU--GCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 15942 0.66 0.669476
Target:  5'- gGGCgaGGCUGGGUGGcuGgGCAG-GCCgGUc -3'
miRNA:   3'- -CCG--CCGGUCCACC--UgCGUCaCGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 42287 0.66 0.659799
Target:  5'- uGGUGGCgGGGaGGAggagcgggagcCGgAGUGCCCu- -3'
miRNA:   3'- -CCGCCGgUCCaCCU-----------GCgUCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 137276 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 56802 0.66 0.630673
Target:  5'- cGGCGGCCGucuGGcGGGCGgGGcuucugGCCCc- -3'
miRNA:   3'- -CCGCCGGU---CCaCCUGCgUCa-----CGGGca -5'
29079 5' -62.7 NC_006146.1 + 112165 0.66 0.64039
Target:  5'- uGGCGGCauguGUGGugGCauugguGGUGCUgGUg -3'
miRNA:   3'- -CCGCCGguc-CACCugCG------UCACGGgCA- -5'
29079 5' -62.7 NC_006146.1 + 135418 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 135789 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136161 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136440 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 136997 0.66 0.650101
Target:  5'- gGGUGGCCGGGccgcugccgGGucCGC--UGCCCGg -3'
miRNA:   3'- -CCGCCGGUCCa--------CCu-GCGucACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 170417 0.67 0.591883
Target:  5'- gGGCGGagGGGggGGuccCGCGGgGCCCGg -3'
miRNA:   3'- -CCGCCggUCCa-CCu--GCGUCaCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.